Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 0.0e+00 1217.6 596 100.0
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 0.0e+00 1137.5 596 93.3
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 0.0e+00 1137.5 596 93.0
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 0.0e+00 1135.6 596 93.1
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 0.0e+00 1121.7 598 91.3
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1107.8 597 89.6
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 0.0e+00 1100.1 598 89.5
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 0.0e+00 1098.6 601 89.9
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 0.0e+00 1083.2 597 88.4
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.2e-307 1057.4 601 87.9
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.1e-304 1049.3 598 87.5
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.1e-304 1049.3 600 85.7
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 1.2e-298 1029.2 604 83.9
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 7.9e-298 1026.5 600 85.2
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.0e-297 1026.2 597 84.1
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 2.3e-297 1025.0 600 84.2
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 8.7e-297 1023.1 602 83.6
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.1e-296 1022.7 600 84.2
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.1e-296 1022.7 604 83.4
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 1.1e-294 1016.1 601 83.4
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.4e-294 1015.8 890 62.2
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.8e-294 1015.4 520 94.8
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.8e-294 1015.4 603 83.3
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 3.1e-294 1014.6 601 83.2
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 2.6e-293 1011.5 599 83.5
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 4.5e-293 1010.7 601 83.0
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.7e-292 1008.8 602 83.7
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 2.9e-292 1008.1 599 83.3
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 3.8e-292 1007.7 603 82.6
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.1e-291 1006.1 604 82.5
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 9.7e-288 993.0 601 82.4
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 7.4e-280 966.8 608 79.6
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 2.1e-274 948.7 605 76.4
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.8e-273 945.7 598 77.8
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 1.1e-272 943.0 577 78.7
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 1.1e-272 943.0 599 78.3
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 2.0e-272 942.2 572 79.2
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 1.7e-271 939.1 576 79.7
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.1e-270 936.4 572 79.9
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 1.1e-270 936.4 600 76.5
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.4e-270 936.0 573 79.4
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.8e-270 935.6 599 77.5
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.4e-270 935.3 572 79.4
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 3.1e-270 934.9 572 79.7
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.1e-270 934.5 571 79.3
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 4.1e-270 934.5 573 79.2
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 4.1e-270 934.5 573 79.2
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.2e-269 932.9 597 77.1
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 3.4e-269 931.4 600 76.0
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 4.5e-269 931.0 578 79.1
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 4.5e-269 931.0 577 78.3
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.2e-268 928.7 602 75.9
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 3.8e-268 927.9 575 78.4
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 5.0e-268 927.5 580 77.9
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 6.5e-268 927.2 602 75.9
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 1.9e-267 925.6 584 77.7
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 7.2e-267 923.7 573 78.4
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.2e-266 922.9 597 75.9
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 4.7e-266 921.0 601 75.0
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 4.7e-266 921.0 606 75.4
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 8.0e-266 920.2 575 78.8
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 3.0e-265 918.3 588 76.4
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 3.9e-265 917.9 607 75.5
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 5.2e-265 917.5 576 77.6
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 8.8e-265 916.8 572 78.3
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 4.4e-264 914.4 575 77.4
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.4e-264 914.4 606 75.2
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 5.7e-264 914.1 571 78.3
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 7.4e-264 913.7 606 75.1
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 9.7e-264 913.3 601 74.7
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 9.7e-264 913.3 578 76.5
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.3e-263 912.9 606 75.1
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 2.2e-263 912.1 580 77.6
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 2.2e-263 912.1 596 74.8
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 4.8e-263 911.0 600 75.0
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 8.2e-263 910.2 621 73.6
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 1.8e-262 909.1 585 75.6
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.8e-262 909.1 594 74.6
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 5.3e-262 907.5 560 77.9
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 9.1e-262 906.7 579 77.7
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 9.1e-262 906.7 599 75.3
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 2.6e-261 905.2 580 75.5
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 2.6e-261 905.2 600 73.7
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 1.3e-260 902.9 596 74.3
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.7e-260 902.5 603 73.6
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 2.2e-260 902.1 597 74.2
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 3.8e-260 901.4 591 74.8
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 6.5e-260 900.6 579 77.0
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 6.5e-260 900.6 608 72.7
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 8.5e-260 900.2 577 76.4
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.1e-259 899.8 581 75.4
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 1.1e-259 899.8 581 76.2
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 1.5e-259 899.4 605 74.5
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 1.5e-259 899.4 604 73.8
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 1.5e-259 899.4 595 75.6
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 5.5e-259 897.5 572 75.3
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 7.2e-259 897.1 586 75.1
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 9.4e-259 896.7 600 74.2
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 1.2e-258 896.3 618 73.3
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 4.7e-258 894.4 577 75.2
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 6.1e-258 894.0 601 72.9
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 8.0e-258 893.6 600 73.8
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.4e-257 892.9 573 76.6
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 5.2e-257 891.0 585 74.5
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 5.2e-257 891.0 606 71.9
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.2e-256 889.8 581 75.7
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 2.6e-256 888.6 542 78.8
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 4.8e-255 884.4 622 71.1
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.4e-254 882.9 603 72.3
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 1.8e-254 882.5 571 74.8
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 1.8e-254 882.5 707 64.9
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 5.3e-254 880.9 600 73.2
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 9.1e-254 880.2 600 72.5
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.3e-252 876.3 606 71.5
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 1.7e-252 875.9 550 78.5
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 2.1e-250 869.0 607 71.3
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 1.0e-249 866.7 573 75.7
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 1.7e-247 859.4 555 75.5
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 5.5e-243 844.3 639 68.5
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 6.3e-239 830.9 522 77.8
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 2.4e-238 828.9 604 70.4
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 3.2e-230 802.0 584 68.3
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 4.1e-230 801.6 558 69.5
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 1.1e-227 793.5 937 49.2
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 8.0e-226 787.3 501 76.8
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 4.3e-211 738.4 602 61.5
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 7.1e-206 721.1 574 65.0
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 7.1e-206 721.1 571 64.8
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.6e-205 719.9 434 85.7
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 9.3e-198 694.1 404 82.9
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 2.8e-194 682.6 545 65.3
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.7e-191 673.3 471 69.6
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 6.4e-191 671.4 566 57.8
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.9e-167 592.8 444 73.9
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 1.6e-165 587.0 340 86.2
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 2.2e-154 550.1 417 68.8
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 2.5e-150 536.6 569 49.0
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 4.5e-136 489.2 307 78.8
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.7e-117 426.0 346 58.7
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 1.5e-102 377.9 452 43.6
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.6e-101 373.2 527 39.1
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 7.6e-99 365.5 470 42.8
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.2e-98 364.0 223 82.5
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 7.1e-89 332.4 262 65.6
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 3.5e-80 303.5 187 79.1
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 1.3e-77 295.0 234 63.2
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 1.2e-75 288.5 385 41.0
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 9.6e-70 268.9 221 60.2
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 9.6e-70 268.9 221 60.2
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.1e-64 251.1 369 35.8
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.8e-63 248.1 170 68.2
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.9e-62 244.6 173 68.8
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.4e-47 195.3 228 49.6
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.1e-44 185.7 107 86.0
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 3.1e-36 157.5 166 53.6
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 5.3e-36 156.8 162 54.3
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 3.7e-29 134.0 122 54.9
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.4e-28 131.3 72 84.7
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 9.4e-17 92.8 105 52.4
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 6.1e-16 90.1 49 79.6
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 6.1e-16 90.1 49 79.6
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 4.0e-15 87.4 46 82.6
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 2.6e-14 84.7 76 57.9
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 2.2e-13 81.6 43 83.7
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 1.6e-11 75.5 48 66.7
CARHR148430 Cardamine hirsuta HOM05D004337 ORTHO05D116339 8.9e-07 59.7 51 66.7


User provided reference genes

Program Settings