Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 2.6e-53 211.8 110 100.0
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 1.0e-46 189.9 113 90.3
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 4.4e-45 184.5 111 87.4
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 5.8e-45 184.1 111 89.2
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 9.8e-45 183.3 111 89.2
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 4.9e-44 181.0 109 85.3
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 3.2e-43 178.3 109 84.4
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 3.2e-43 178.3 109 84.4
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 3.2e-43 178.3 109 84.4
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 5.4e-43 177.6 109 85.3
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 2.7e-42 175.3 106 85.8
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 2.7e-42 175.3 111 83.8
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 3.5e-42 174.9 110 83.6
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 4.6e-42 174.5 109 82.6
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 5.0e-41 171.0 110 83.6
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 6.6e-41 170.6 106 82.1
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 8.6e-41 170.2 106 82.1
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 4.3e-40 167.9 110 80.9
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 4.3e-40 167.9 110 80.9
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 1.9e-35 152.5 109 77.1
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 1.6e-34 149.4 113 73.5
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 7.1e-27 124.0 115 60.9
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 2.1e-26 122.5 108 62.0
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 1.0e-25 120.2 107 59.8
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 1.3e-25 119.8 104 62.5
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 2.3e-25 119.0 99 62.6
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 3.0e-25 118.6 104 61.5
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 6.6e-25 117.5 107 60.7
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 1.5e-24 116.3 108 58.3
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 3.3e-24 115.2 107 57.0
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 5.6e-24 114.4 102 57.8
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 5.6e-24 114.4 102 60.8
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 5.6e-24 114.4 103 57.3
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 5.6e-24 114.4 96 60.4
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 5.6e-24 114.4 108 57.4
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 5.6e-24 114.4 108 57.4
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 5.6e-24 114.4 102 59.8
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 7.3e-24 114.0 108 57.4
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 7.3e-24 114.0 87 63.2
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 7.3e-24 114.0 106 57.5
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 9.5e-24 113.6 94 61.7
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 1.2e-23 113.2 101 59.4
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 1.2e-23 113.2 96 60.4
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.6e-23 112.8 119 57.1
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 1.6e-23 112.8 102 59.8
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 1.6e-23 112.8 99 58.6
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 2.1e-23 112.5 108 56.5
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 2.1e-23 112.5 105 56.2
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 2.1e-23 112.5 93 60.2
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 2.8e-23 112.1 96 60.4
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 2.8e-23 112.1 94 59.6
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 2.8e-23 112.1 96 60.4
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 3.6e-23 111.7 109 55.0
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 8.1e-23 110.5 96 59.4
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 8.1e-23 110.5 109 53.2
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.1e-22 110.2 92 60.9
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 1.1e-22 110.2 105 58.1
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.1e-22 110.2 107 54.2
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 1.1e-22 110.2 97 61.9
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 1.1e-22 110.2 113 54.0
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 1.1e-22 110.2 113 54.0
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 1.4e-22 109.8 105 59.0
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 1.4e-22 109.8 107 55.1
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 1.8e-22 109.4 102 57.8
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 1.8e-22 109.4 109 57.8
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 1.8e-22 109.4 107 55.1
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 2.4e-22 109.0 107 57.0
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 4.0e-22 108.2 107 55.1
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 4.0e-22 108.2 106 57.5
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 4.0e-22 108.2 89 64.0
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 4.0e-22 108.2 97 58.8
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 5.2e-22 107.8 86 62.8
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 5.2e-22 107.8 97 59.8
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 1.2e-21 106.7 97 56.7
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.2e-21 106.7 106 57.5
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 1.2e-21 106.7 106 56.6
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 1.2e-21 106.7 102 56.9
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 2.0e-21 105.9 106 57.5
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 2.0e-21 105.9 88 60.2
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 2.0e-21 105.9 106 57.5
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 3.4e-21 105.1 83 62.7
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 3.4e-21 105.1 76 64.5
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 3.4e-21 105.1 76 64.5
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 3.4e-21 105.1 116 54.3
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 3.4e-21 105.1 87 64.4
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 4.4e-21 104.8 94 56.4
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 5.8e-21 104.4 85 61.2
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 5.8e-21 104.4 104 54.8
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 5.8e-21 104.4 83 65.1
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 7.6e-21 104.0 83 62.7
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 1.3e-20 103.2 109 56.0
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 1.3e-20 103.2 106 51.9
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 1.3e-20 103.2 106 51.9
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 2.9e-20 102.1 82 62.2
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 2.9e-20 102.1 108 53.7
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 4.9e-20 101.3 103 54.4
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 4.9e-20 101.3 106 50.9
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 6.4e-20 100.9 109 50.5
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 6.4e-20 100.9 82 62.2
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 8.4e-20 100.5 108 51.9
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.1e-19 100.1 109 49.5
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 1.4e-19 99.8 90 55.6
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 1.4e-19 99.8 81 61.7
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.9e-19 99.4 109 49.5
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 2.4e-19 99.0 75 64.0
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 2.4e-19 99.0 99 52.5
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.4e-19 99.0 81 63.0
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 2.4e-19 99.0 95 54.7
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 5.4e-19 97.8 97 53.6
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 5.4e-19 97.8 82 59.8
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 5.4e-19 97.8 91 56.0
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 1.2e-18 96.7 109 45.9
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 1.2e-18 96.7 114 50.0
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 1.6e-18 96.3 102 52.0
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 2.3e-17 92.4 66 63.6
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 2.3e-17 92.4 62 66.1
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 5.1e-17 91.3 80 57.5
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 6.6e-17 90.9 101 52.5
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.9e-16 89.4 71 59.2
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 5.6e-16 87.8 90 52.2
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 2.1e-15 85.9 59 66.1
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 5.2e-14 81.3 74 52.7
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 3.4e-13 78.6 73 46.6
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 3.2e-11 72.0 82 42.7
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 4.6e-10 68.2 90 40.0
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 3.0e-09 65.5 68 44.1
Hma1.2p1_4173F.1_g338420 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 2.4e-06 55.8 54 55.6
Oeu062074.1 Olea europaea HOM05D013196 ORTHO05D010523 6.9e-06 54.3 48 60.4


User provided reference genes

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