Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR203810 Cardamine hirsuta HOM05D002753 ORTHO05D003097 1.5e-36 155.6 77 100.0
Thhalv10013860m.g Eutrema salsugineum HOM05D002753 ORTHO05D003097 1.2e-09 66.2 33 90.9
BcaB05g21545 Brassica carinata HOM05D002753 ORTHO05D003097 2.7e-09 65.1 33 90.9
Carub.0003s2766 Capsella rubella HOM05D002753 ORTHO05D003097 2.7e-09 65.1 33 87.9
Aa31LG3G17470 Aethionema arabicum HOM05D002753 ORTHO05D003097 3.6e-09 64.7 33 90.9
BcaC03g13263 Brassica carinata HOM05D002753 ORTHO05D003097 4.6e-09 64.3 32 93.8
A02p00030 Brassica napus HOM05D002753 ORTHO05D003097 4.6e-09 64.3 32 93.8
C02p03930 Brassica napus HOM05D002753 ORTHO05D003097 4.6e-09 64.3 32 93.8
BolC2t06356H Brassica oleracea HOM05D002753 ORTHO05D003097 4.6e-09 64.3 32 93.8
BraA02t04986Z Brassica rapa HOM05D002753 ORTHO05D003097 4.6e-09 64.3 32 93.8
Sp6g33790 Schrenkiella parvula HOM05D002753 ORTHO05D003097 6.1e-09 63.9 32 93.8
AT5G09580 Arabidopsis thaliana HOM05D002753 ORTHO05D003097 7.9e-09 63.5 33 87.9
AL6G19990 Arabidopsis lyrata HOM05D002753 ORTHO05D003097 1.4e-08 62.8 33 84.8
Lj5A226G57 Lonicera japonica HOM05D002753 ORTHO05D003097 3.0e-08 61.6 36 77.8
GSVIVG01038511001 Vitis vinifera HOM05D002753 ORTHO05D003097 3.0e-08 61.6 33 84.8
CSS0006440 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 5.1e-08 60.8 34 82.4
Lj4g0007428 Lotus japonicus HOM05D002753 ORTHO05D003097 6.7e-08 60.5 33 84.8
Lj4g0024024 Lotus japonicus HOM05D002753 ORTHO05D003097 6.7e-08 60.5 33 84.8
LjContig00139g0003532 Lotus japonicus HOM05D002753 ORTHO05D003097 6.7e-08 60.5 33 84.8
LjContig00139g0010456 Lotus japonicus HOM05D002753 ORTHO05D003097 6.7e-08 60.5 33 84.8
LjContig00139g0015911 Lotus japonicus HOM05D002753 ORTHO05D003097 6.7e-08 60.5 33 84.8
Lalb_Chr16g0383061 Lupinus albus HOM05D002753 ORTHO05D003097 6.7e-08 60.5 33 84.8
Glyma.08G065200 Glycine max HOM05D002753 ORTHO05D003097 8.8e-08 60.1 33 84.8
CSS0000609 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 1.5e-07 59.3 33 81.8
CSS0037026 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 1.5e-07 59.3 33 81.8
CsaV3_7G007440 Cucumis sativus L. HOM05D002753 ORTHO05D003097 1.5e-07 59.3 33 78.8
Dinv08972 Davidia involucrata HOM05D002753 ORTHO05D003097 1.5e-07 59.3 33 81.8
Glyma.07G184100 Glycine max HOM05D002753 ORTHO05D003097 1.5e-07 59.3 32 87.5
Medtr1g053780 Medicago truncatula HOM05D002753 ORTHO05D003097 1.5e-07 59.3 33 81.8
Medtr4g092970 Medicago truncatula HOM05D002753 ORTHO05D003097 1.5e-07 59.3 33 81.8
PGR142G3779 Punica granatum HOM05D002753 ORTHO05D003097 1.5e-07 59.3 33 81.8
Thecc.02G125700 Theobroma cacao HOM05D002753 ORTHO05D003097 1.5e-07 59.3 33 81.8
Ca_18410_v3 Cicer arietinum L. HOM05D002753 ORTHO05D003097 2.0e-07 58.9 33 81.8
Lj5A226G56 Lonicera japonica HOM05D002753 ORTHO05D003097 2.0e-07 58.9 33 81.8
Psat7g103160 Pisum sativum HOM05D002753 ORTHO05D003097 2.0e-07 58.9 33 81.8
TWI23G0822 Tripterygium wilfordii HOM05D002753 ORTHO05D003097 2.0e-07 58.9 33 78.8
arahy.Tifrunner.gnm1.ann1.JKRU9X Arachis hypogaea HOM05D002753 ORTHO05D003097 2.6e-07 58.5 34 79.4
Sc08g0004090 Simmondsia chinensis HOM05D002753 ORTHO05D003097 2.6e-07 58.5 33 78.8
CSS0028145 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 4.4e-07 57.8 33 78.8
CiPaw.05G027300 Carya illinoinensis HOM05D002753 ORTHO05D003097 4.4e-07 57.8 34 76.5
MD10G1056400 Malus domestica HOM05D002753 ORTHO05D003097 4.4e-07 57.8 33 81.8
Prupe.8G074100 Prunus persica HOM05D002753 ORTHO05D003097 4.4e-07 57.8 33 81.8
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 5.7e-07 57.4 33 81.8
MELO3C018558.2 Cucumis melo HOM05D002753 ORTHO05D003097 5.7e-07 57.4 33 75.8
MBI16_g10443_MAGBIO Magnolia biondii HOM05D002753 ORTHO05D003097 5.7e-07 57.4 34 73.5
Phvul.002G215600 Phaseolus vulgaris HOM05D002753 ORTHO05D003097 5.7e-07 57.4 33 78.8
QL11p026419 Quercus lobata HOM05D002753 ORTHO05D003097 5.7e-07 57.4 33 78.8
vmacro19599 Vaccinium macrocarpon HOM05D002753 ORTHO05D003097 5.7e-07 57.4 33 78.8
TAR376G1183 Trochodendron aralioides HOM05D002753 ORTHO05D003097 7.4e-07 57.0 33 75.8
CSS0023717 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 9.7e-07 56.6 33 75.8
ClCG09G016500 Citrullus lanatus HOM05D002753 ORTHO05D003097 9.7e-07 56.6 33 75.8
Eucgr.I02590 Eucalyptus grandis HOM05D002753 ORTHO05D003097 9.7e-07 56.6 33 78.8
PGR142G0966 Punica granatum HOM05D002753 ORTHO05D003097 9.7e-07 56.6 33 78.8
Rhsim05G0096700 Rhododendron simsii HOM05D002753 ORTHO05D003097 9.7e-07 56.6 33 78.8
Rhsim05G0097300 Rhododendron simsii HOM05D002753 ORTHO05D003097 9.7e-07 56.6 37 73.0
Sed0024829 Sechium edule HOM05D002753 ORTHO05D003097 9.7e-07 56.6 33 75.8
VMungo0251G0167 Vigna mungo HOM05D002753 ORTHO05D003097 9.7e-07 56.6 33 75.8
Duzib132G0158 Durio zibethinus HOM05D002753 ORTHO05D003097 1.3e-06 56.2 33 78.8
Manes.10G093500 Manihot esculenta HOM05D002753 ORTHO05D003097 1.3e-06 56.2 33 78.8
RcHm_v2.0_Chr2g0118161 Rosa chinensis HOM05D002753 ORTHO05D003097 1.7e-06 55.8 33 78.8
SalBow6G5254 Salvia bowleyana HOM05D002753 ORTHO05D003097 1.7e-06 55.8 33 72.7
MSTRG.16630 Avicennia marina HOM05D002753 ORTHO05D003097 2.2e-06 55.5 33 75.8
Cpa.g.sc1376.1 Carica papaya HOM05D002753 ORTHO05D003097 2.2e-06 55.5 33 78.8
FvH4_1g23320 Fragaria vesca HOM05D002753 ORTHO05D003097 2.2e-06 55.5 33 78.8
FAN26G3199 Fragaria x ananassa HOM05D002753 ORTHO05D003097 2.2e-06 55.5 33 78.8
FAN19G2857 Fragaria x ananassa HOM05D002753 ORTHO05D003097 3.7e-06 54.7 32 81.2
FAN23G1321 Fragaria x ananassa HOM05D002753 ORTHO05D003097 3.7e-06 54.7 32 81.2
FAN28G0139 Fragaria x ananassa HOM05D002753 ORTHO05D003097 3.7e-06 54.7 32 81.2
Nn2g15300 Nelumbo nucifera HOM05D002753 ORTHO05D003097 3.7e-06 54.7 33 75.8
Sabra16G0177700 Salix brachista HOM05D002753 ORTHO05D003097 3.7e-06 54.7 33 75.8
SGA_v2.0_scaffold32G12940 Striga asiatica HOM05D002753 ORTHO05D003097 3.7e-06 54.7 33 72.7
Actinidia28019 Actinidia chinensis HOM05D002753 ORTHO05D003097 4.8e-06 54.3 33 78.8
Ah.01g024130 Amaranthus hybridus HOM05D002753 ORTHO05D003097 4.8e-06 54.3 33 72.7
Aqoxy6G00650 Aquilegia oxysepala HOM05D002753 ORTHO05D003097 4.8e-06 54.3 33 75.8
AUR62027087 Chenopodium quinoa HOM05D002753 ORTHO05D003097 4.8e-06 54.3 33 72.7
AUR62030927 Chenopodium quinoa HOM05D002753 ORTHO05D003097 4.8e-06 54.3 33 72.7
PSO339G2269 Papaver somniferum HOM05D002753 ORTHO05D003097 4.8e-06 54.3 33 72.7
PSO339G4496 Papaver somniferum HOM05D002753 ORTHO05D003097 4.8e-06 54.3 33 72.7
PSO801G0587 Papaver somniferum HOM05D002753 ORTHO05D003097 4.8e-06 54.3 33 72.7
EL10Ac9g22119 Beta vulgaris HOM05D002753 ORTHO05D003097 6.3e-06 53.9 33 72.7
Cc02_g20650 Coffea canephora HOM05D002753 ORTHO05D003097 6.3e-06 53.9 35 68.6
DCAR_001841 Daucus carota HOM05D002753 ORTHO05D003097 6.3e-06 53.9 33 75.8
Migut.B00526 Erythranthe guttata HOM05D002753 ORTHO05D003097 6.3e-06 53.9 33 75.8
Atru.chr6.1395 Acer truncatum HOM05D002753 ORTHO05D003097 8.2e-06 53.5 33 72.7
Ciclev10029816m.g Citrus clementina HOM05D002753 ORTHO05D003097 8.2e-06 53.5 66 47.0
Rhsim05G0097100 Rhododendron simsii HOM05D002753 ORTHO05D003097 8.2e-06 53.5 34 76.5
RcHm_v2.0_Chr2g0118131 Rosa chinensis HOM05D002753 ORTHO05D003097 8.2e-06 53.5 33 75.8


User provided reference genes

Program Settings