Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 2.5e-107 392.1 197 100.0
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 1.3e-84 316.6 195 81.5
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 3.3e-83 312.0 195 81.0
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 2.1e-82 309.3 197 80.7
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 8.3e-79 297.4 195 76.9
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 2.3e-76 289.3 196 76.5
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 2.5e-75 285.8 195 73.8
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 9.6e-75 283.9 195 75.4
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 9.6e-75 283.9 195 72.8
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 9.6e-75 283.9 195 72.8
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 2.1e-74 282.7 195 73.3
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 2.1e-74 282.7 195 72.8
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 5.3e-57 224.9 198 63.1
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 2.0e-56 223.0 197 61.4
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 4.5e-56 221.9 202 59.9
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 5.8e-56 221.5 192 62.5
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 1.3e-55 220.3 200 60.5
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 4.2e-54 215.3 203 57.6
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 2.7e-53 212.6 200 59.0
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 1.0e-52 210.7 196 58.2
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 2.3e-52 209.5 199 57.8
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 2.3e-52 209.5 199 57.8
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 2.3e-52 209.5 199 57.8
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 5.1e-52 208.4 190 61.1
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 4.0e-49 198.7 185 60.0
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 5.8e-48 194.9 175 60.0
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 3.5e-37 159.1 202 44.1
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 2.3e-36 156.4 97 75.3
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 3.4e-32 142.5 193 41.5
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.3e-31 140.6 193 43.0
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 1.7e-31 140.2 88 72.7
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 1.7e-31 140.2 209 39.7
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 3.8e-31 139.0 195 41.5
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 3.8e-31 139.0 212 40.1
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.9e-30 136.7 204 38.7
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 5.5e-30 135.2 198 39.4
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 5.5e-30 135.2 199 41.7
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 1.2e-29 134.0 200 39.5
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 2.1e-29 133.3 193 43.0
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 3.6e-29 132.5 211 40.3
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 4.6e-29 132.1 204 40.7
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 7.9e-29 131.3 196 39.8
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 1.0e-28 131.0 193 41.5
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 1.8e-28 130.2 196 39.8
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 1.8e-28 130.2 196 39.8
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 3.9e-28 129.0 198 39.9
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 3.9e-28 129.0 196 39.3
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 3.9e-28 129.0 196 39.3
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 8.8e-28 127.9 196 38.3
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 1.1e-27 127.5 198 40.9
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 1.1e-27 127.5 196 38.8
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 1.5e-27 127.1 193 40.4
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 2.5e-27 126.3 203 36.5
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 5.7e-27 125.2 203 36.0
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 7.4e-27 124.8 215 39.1
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 7.4e-27 124.8 203 36.9
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.2e-26 123.2 213 36.6
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.2e-26 123.2 205 38.5
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 3.7e-26 122.5 198 35.4
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 6.3e-26 121.7 161 44.7
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.3e-26 121.7 207 37.2
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.1e-25 120.9 197 38.1
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.1e-25 120.9 197 38.1
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 1.8e-25 120.2 207 36.7
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.8e-25 120.2 178 39.3
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 3.1e-25 119.4 207 37.2
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.1e-25 119.0 214 35.5
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 4.1e-25 119.0 211 40.3
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 5.3e-25 118.6 214 36.4
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 5.3e-25 118.6 205 36.1
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 6.9e-25 118.2 200 38.5
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 9.1e-25 117.9 167 40.1
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 2.0e-24 116.7 194 37.6
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 4.5e-24 115.5 207 36.2
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 4.5e-24 115.5 203 36.5
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 5.9e-24 115.2 214 36.0
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 5.9e-24 115.2 204 37.7
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 5.9e-24 115.2 205 35.6
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 7.7e-24 114.8 196 37.2
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.2e-23 113.2 187 39.0
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.9e-23 112.8 188 38.8
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.9e-23 112.8 188 38.8
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 3.8e-23 112.5 190 36.8
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.5e-23 111.7 213 34.3
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.1e-22 110.9 195 36.9
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-22 110.9 192 37.5
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 1.9e-22 110.2 196 35.7
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.2e-22 109.4 198 34.3
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 3.2e-22 109.4 200 37.5
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.2e-22 109.4 188 37.2
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 4.2e-22 109.0 229 37.1
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.5e-22 108.6 189 36.5
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 7.2e-22 108.2 179 34.6
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 9.4e-22 107.8 179 36.9
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.2e-21 107.5 212 35.8
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.6e-21 107.1 193 34.2
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 1.6e-21 107.1 178 34.3
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.6e-21 107.1 202 36.1
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 2.1e-21 106.7 183 36.1
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 2.7e-21 106.3 112 50.0
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 6.1e-21 105.1 185 35.7
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 1.0e-20 104.4 231 35.9
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 1.0e-20 104.4 231 35.9
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.0e-20 104.4 209 30.6
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.0e-20 104.4 209 34.4
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 1.8e-20 103.6 210 33.3
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 2.3e-20 103.2 178 35.4
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.0e-20 102.8 212 34.4
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.9e-20 102.4 169 33.7
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 5.1e-20 102.1 169 34.3
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 6.7e-20 101.7 181 33.1
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.1e-19 100.9 169 34.3
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.1e-19 100.9 169 34.3
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.1e-19 100.9 191 34.6
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.5e-19 100.5 178 33.7
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 2.0e-19 100.1 208 31.7
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 2.6e-19 99.8 175 36.6
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 2.6e-19 99.8 177 34.5
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 2.6e-19 99.8 203 31.0
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 3.3e-19 99.4 197 29.4
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 4.4e-19 99.0 178 34.3
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 4.4e-19 99.0 178 33.1
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.3e-18 97.4 199 30.7
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.3e-18 97.4 199 30.7
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 3.7e-18 95.9 199 30.2
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 4.8e-18 95.5 206 35.0
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 6.3e-18 95.1 201 31.3
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 6.3e-18 95.1 170 35.3
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 8.2e-18 94.7 201 32.8
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 8.2e-18 94.7 171 33.9
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 1.1e-17 94.4 199 29.6
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.4e-17 94.0 156 36.5
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 1.8e-17 93.6 136 37.5
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 1.8e-17 93.6 210 31.9
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 5.3e-17 92.0 215 34.0
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 7.0e-17 91.7 215 33.5
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 7.0e-17 91.7 193 31.6
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 9.1e-17 91.3 120 39.2
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 9.1e-17 91.3 178 30.3
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 9.1e-17 91.3 195 29.7
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 1.2e-16 90.9 170 30.0
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 1.2e-16 90.9 120 39.2
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.2e-16 90.9 169 31.4
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 1.5e-16 90.5 192 34.9
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 1.5e-16 90.5 210 31.9
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 2.0e-16 90.1 124 37.1
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 2.0e-16 90.1 170 32.9
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 2.0e-16 90.1 187 33.2
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 3.5e-16 89.4 124 38.7
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 3.5e-16 89.4 198 30.8
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 4.5e-16 89.0 206 29.1
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 5.9e-16 88.6 164 32.3
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 5.9e-16 88.6 175 35.4
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 5.9e-16 88.6 194 30.4
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 7.7e-16 88.2 124 36.3
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 7.7e-16 88.2 120 37.5
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 7.7e-16 88.2 192 29.7
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.0e-15 87.8 120 40.0
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 3.8e-15 85.9 208 34.1
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 3.8e-15 85.9 168 33.3
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 5.0e-15 85.5 177 34.5
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 5.0e-15 85.5 196 33.2
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 6.5e-15 85.1 192 29.7
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 6.5e-15 85.1 196 30.6
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 8.5e-15 84.7 120 35.8
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.1e-14 84.3 136 36.8
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 1.5e-14 84.0 215 34.9
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 5.5e-14 82.0 169 32.0
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 3.6e-13 79.3 156 31.4
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 1.0e-12 77.8 139 38.8
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 2.0e-11 73.6 84 42.9
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 3.3e-11 72.8 153 31.4
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.8e-09 67.0 130 35.4
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 7.0e-09 65.1 90 33.3
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 9.1e-09 64.7 136 31.6
SEGI_20067 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 1.2e-08 64.3 131 32.8
SEGI_26050 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 2.6e-08 63.2 154 32.5
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 4.5e-08 62.4 120 31.7
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 1.3e-07 60.8 112 35.7
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 1.3e-07 60.8 135 32.6
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.7e-07 60.5 136 31.6
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.9e-07 59.7 136 33.1
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.8e-07 59.3 112 33.9
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 3.2e-06 56.2 128 33.6
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 4.2e-06 55.8 130 36.2


User provided reference genes

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