Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 5.7e-175 617.5 308 100.0
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 1.1e-165 586.6 308 92.5
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 2.2e-163 578.9 308 92.9
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 7.2e-162 573.9 308 92.5
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 2.6e-159 565.5 308 90.6
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 3.4e-159 565.1 308 89.9
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 3.4e-159 565.1 308 89.9
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 5.7e-159 564.3 308 89.9
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 1.3e-158 563.1 308 89.0
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 2.2e-158 562.4 308 89.3
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 9.1e-157 557.0 308 89.0
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 2.0e-151 539.3 308 87.0
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 3.5e-148 528.5 308 84.7
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 7.8e-140 500.7 308 78.6
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 4.4e-127 458.4 302 74.2
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 7.5e-127 457.6 303 72.3
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.3e-126 456.8 300 74.3
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.3e-126 456.8 300 74.3
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 8.3e-126 454.1 303 72.9
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 4.1e-125 451.8 302 73.2
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 5.4e-125 451.4 300 73.0
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 5.4e-125 451.4 304 72.4
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 1.2e-124 450.3 302 73.5
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 2.7e-124 449.1 303 72.3
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 4.6e-124 448.4 304 71.7
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 7.8e-124 447.6 303 71.0
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 1.0e-123 447.2 300 71.7
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 1.7e-123 446.4 294 72.8
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 2.3e-123 446.0 302 71.9
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 3.0e-123 445.7 303 71.6
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 6.6e-123 444.5 303 71.0
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 6.6e-123 444.5 303 70.6
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 8.6e-123 444.1 303 70.6
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 2.5e-122 442.6 305 69.8
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.5e-122 442.6 303 70.6
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 2.5e-122 442.6 303 70.3
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 3.3e-122 442.2 298 72.1
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 4.3e-122 441.8 303 71.3
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 9.5e-122 440.7 303 69.6
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.2e-121 440.3 304 70.1
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 1.2e-121 440.3 303 70.3
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.2e-121 440.3 302 70.2
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 1.2e-121 440.3 298 71.5
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 2.8e-121 439.1 303 71.6
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 3.6e-121 438.7 303 71.0
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 4.7e-121 438.3 301 70.1
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 6.2e-121 438.0 312 69.6
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 6.2e-121 438.0 298 71.5
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.4e-120 436.8 300 71.0
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 1.4e-120 436.8 300 69.3
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.8e-120 436.4 299 70.6
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.8e-120 436.4 302 69.9
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 4.0e-120 435.3 300 70.7
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 6.8e-120 434.5 315 68.6
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 8.9e-120 434.1 284 73.2
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 8.9e-120 434.1 300 69.3
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 8.9e-120 434.1 300 69.7
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 8.9e-120 434.1 300 69.3
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 2.0e-119 433.0 300 70.0
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 2.6e-119 432.6 300 70.0
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 9.9e-119 430.6 304 68.4
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 9.9e-119 430.6 300 70.3
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 9.9e-119 430.6 300 70.0
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.7e-118 429.9 300 69.0
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.7e-118 429.9 323 66.3
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 1.7e-118 429.9 313 67.7
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.8e-118 428.7 300 69.0
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 3.8e-118 428.7 300 69.7
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 8.4e-118 427.6 310 67.7
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.9e-117 426.4 300 69.0
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 3.2e-117 425.6 300 69.7
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 3.2e-117 425.6 284 73.2
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 4.1e-117 425.2 300 68.7
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 5.4e-117 424.9 300 68.7
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 9.2e-117 424.1 300 69.3
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.2e-116 423.7 300 68.3
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 2.7e-116 422.5 323 65.9
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 2.7e-116 422.5 300 68.3
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 6.0e-116 421.4 284 72.5
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 7.8e-116 421.0 284 71.5
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.7e-115 419.9 304 69.1
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 3.9e-115 418.7 307 66.8
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.5e-114 416.8 300 66.0
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.9e-114 416.4 300 66.3
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 3.3e-114 415.6 305 65.6
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 3.3e-114 415.6 304 65.1
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 5.6e-114 414.8 300 67.0
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 1.2e-113 413.7 300 67.0
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.6e-113 413.3 336 62.5
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 6.2e-113 411.4 293 67.9
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-112 410.6 299 67.6
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 2.4e-112 409.5 300 66.7
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 4.0e-112 408.7 337 60.8
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 5.2e-112 408.3 289 68.5
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 9.0e-112 407.5 288 69.1
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-111 407.1 286 71.0
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.4e-111 405.6 298 66.1
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.3e-110 403.7 298 65.8
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.7e-110 403.3 300 66.7
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 8.4e-110 401.0 354 59.3
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.4e-109 400.2 280 71.1
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 2.1e-108 396.4 305 61.0
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 2.5e-106 389.4 346 59.5
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 2.7e-100 369.4 251 72.9
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 5.1e-99 365.2 304 61.8
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.6e-97 360.1 251 70.1
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 3.4e-95 352.4 281 63.7
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 9.9e-95 350.9 293 60.4
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 4.9e-94 348.6 251 68.5
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 7.1e-93 344.7 251 68.5
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 2.1e-92 343.2 298 56.7
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 2.7e-92 342.8 299 58.9
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.1e-88 330.9 259 63.7
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 3.4e-87 325.9 206 74.3
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 1.7e-78 297.0 207 69.1
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 1.7e-78 297.0 206 70.9
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 1.7e-73 280.4 344 44.8
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 7.7e-71 271.6 236 61.4
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 4.8e-65 252.3 216 59.7
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.1e-61 241.1 187 64.2
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 2.5e-61 240.0 192 64.1
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 4.7e-60 235.7 309 43.4
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.3e-54 217.6 149 72.5
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 3.2e-53 213.0 319 39.5
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-52 211.1 185 62.7
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 1.5e-50 204.1 142 71.8
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-42 177.2 171 54.4
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 3.5e-39 166.4 300 34.7
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 2.3e-35 153.7 100 72.0
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-34 151.4 112 68.8
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 7.8e-31 138.7 110 60.0
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 1.7e-22 110.9 176 38.6
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 5.0e-22 109.4 92 62.0
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 8.0e-20 102.1 67 71.6
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-18 98.2 76 68.4
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 1.7e-17 94.4 74 63.5
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 7.0e-16 89.0 86 54.7
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 1.5e-13 81.3 57 70.2
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 1.4e-11 74.7 53 73.6
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-11 74.3 40 80.0
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 1.2e-07 61.6 43 60.5


User provided reference genes

Program Settings