Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR202620 Cardamine hirsuta HOM05D006706 ORTHO05D008794 1.1e-110 403.3 200 100.0
AT5G10700 Arabidopsis thaliana HOM05D006706 ORTHO05D008794 6.0e-93 344.4 201 87.6
AL6G21240 Arabidopsis lyrata HOM05D006706 ORTHO05D008794 8.7e-92 340.5 191 90.6
Carub.0006s0917 Capsella rubella HOM05D006706 ORTHO05D008794 1.9e-86 322.8 191 86.9
Sp6g32760 Schrenkiella parvula HOM05D006706 ORTHO05D008794 3.6e-85 318.5 190 85.8
Thhalv10014763m.g Eutrema salsugineum HOM05D006706 ORTHO05D008794 1.8e-81 306.2 191 83.8
BcaB01g05507 Brassica carinata HOM05D006706 ORTHO05D008794 6.9e-81 304.3 190 82.1
C03p05410 Brassica napus HOM05D006706 ORTHO05D008794 6.9e-81 304.3 190 82.1
BraA03t09810Z Brassica rapa HOM05D006706 ORTHO05D008794 6.9e-81 304.3 190 83.2
BcaB01g06271 Brassica carinata HOM05D006706 ORTHO05D008794 4.5e-80 301.6 191 82.2
BcaC04g19291 Brassica carinata HOM05D006706 ORTHO05D008794 5.9e-80 301.2 191 81.2
A03p04700 Brassica napus HOM05D006706 ORTHO05D008794 1.9e-78 296.2 190 81.6
Aa31LG3G16430 Aethionema arabicum HOM05D006706 ORTHO05D008794 5.9e-72 274.6 188 77.1
THA.LOC104814973 Tarenaya hassleriana HOM05D006706 ORTHO05D008794 1.4e-60 236.9 192 67.7
Sabra18G0015100 Salix brachista HOM05D006706 ORTHO05D008794 9.1e-57 224.2 187 63.1
Potri.018G008000 Populus trichocarpa HOM05D006706 ORTHO05D008794 7.7e-56 221.1 187 62.6
Rhsim07G0178100 Rhododendron simsii HOM05D006706 ORTHO05D008794 2.2e-55 219.5 137 74.5
Manes.03G004300 Manihot esculenta HOM05D006706 ORTHO05D008794 2.9e-55 219.2 131 77.9
FAN27G0070 Fragaria x ananassa HOM05D006706 ORTHO05D008794 5.0e-55 218.4 131 78.6
Lj7C748T8 Lonicera japonica HOM05D006706 ORTHO05D008794 5.0e-55 218.4 186 61.3
RcHm_v2.0_Chr1g0366021 Rosa chinensis HOM05D006706 ORTHO05D008794 6.5e-55 218.0 131 77.9
Peaxi162Scf00459g00840 Petunia axillaris HOM05D006706 ORTHO05D008794 1.1e-54 217.2 142 73.2
FvH4_2g36680 Fragaria vesca HOM05D006706 ORTHO05D008794 1.5e-54 216.9 131 77.9
FAN20G0608 Fragaria x ananassa HOM05D006706 ORTHO05D008794 1.5e-54 216.9 131 77.9
CAN.G566.65 Capsicum annuum HOM05D006706 ORTHO05D008794 2.5e-54 216.1 178 64.0
Thecc.09G008100 Theobroma cacao HOM05D006706 ORTHO05D008794 2.5e-54 216.1 151 69.5
Cpa.g.sc23.24 Carica papaya HOM05D006706 ORTHO05D008794 4.2e-54 215.3 157 68.8
Solyc12g096390.2 Solanum lycopersicum HOM05D006706 ORTHO05D008794 4.2e-54 215.3 149 72.5
Sopen12g032240 Solanum pennellii HOM05D006706 ORTHO05D008794 4.2e-54 215.3 117 85.5
Duzib187G1270 Durio zibethinus HOM05D006706 ORTHO05D008794 5.5e-54 214.9 147 70.7
Prupe.1G459500 Prunus persica HOM05D006706 ORTHO05D008794 5.5e-54 214.9 131 75.6
CsaV3_2G031370 Cucumis sativus L. HOM05D006706 ORTHO05D008794 7.2e-54 214.5 145 71.7
Haze_21755 Corylus avellana HOM05D006706 ORTHO05D008794 9.4e-54 214.2 190 60.5
CiPaw.08G020300 Carya illinoinensis HOM05D006706 ORTHO05D008794 2.1e-53 213.0 193 60.6
PGSC0003DMG400029370 Solanum tuberosum HOM05D006706 ORTHO05D008794 2.1e-53 213.0 117 83.8
Eucgr.C04010 Eucalyptus grandis HOM05D006706 ORTHO05D008794 3.6e-53 212.2 131 75.6
Nitab4.5_0010092g0010 Nicotiana tabacum HOM05D006706 ORTHO05D008794 3.6e-53 212.2 125 80.0
Psat0s1809g0040 Pisum sativum HOM05D006706 ORTHO05D008794 3.6e-53 212.2 188 62.2
CANSAT78G2093 Cannabis sativa HOM05D006706 ORTHO05D008794 6.1e-53 211.5 190 60.0
Ciclev10009845m.g Citrus clementina HOM05D006706 ORTHO05D008794 6.1e-53 211.5 144 72.9
PSO063G0792 Papaver somniferum HOM05D006706 ORTHO05D008794 6.1e-53 211.5 157 66.9
RcHm_v2.0_Chr6g0305051 Rosa chinensis HOM05D006706 ORTHO05D008794 6.1e-53 211.5 131 77.1
Cfa013279 Carpinus fangiana HOM05D006706 ORTHO05D008794 8.0e-53 211.1 183 61.7
Ca_15656_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 8.0e-53 211.1 148 71.6
COL.COLO4_19024 Corchorus olitorius HOM05D006706 ORTHO05D008794 8.0e-53 211.1 172 63.4
VMungo1309G0608 Vigna mungo HOM05D006706 ORTHO05D008794 8.0e-53 211.1 185 60.0
PGR044G2738 Punica granatum HOM05D006706 ORTHO05D008794 1.0e-52 210.7 191 57.1
QL12p025335 Quercus lobata HOM05D006706 ORTHO05D008794 1.0e-52 210.7 132 76.5
Gorai.010G122100 Gossypium raimondii HOM05D006706 ORTHO05D008794 1.4e-52 210.3 169 66.3
SalBow4G1165 Salvia bowleyana HOM05D006706 ORTHO05D008794 1.4e-52 210.3 118 81.4
Ca_15664_v3 Cicer arietinum L. HOM05D006706 ORTHO05D008794 1.8e-52 209.9 144 72.9
TPR.G12362 Trifolium pratense HOM05D006706 ORTHO05D008794 1.8e-52 209.9 162 65.4
GSVIVG01035513001 Vitis vinifera HOM05D006706 ORTHO05D008794 1.8e-52 209.9 170 61.8
arahy.Tifrunner.gnm1.ann1.G0PQAF Arachis hypogaea HOM05D006706 ORTHO05D008794 2.3e-52 209.5 192 58.3
MELO3C011186.2 Cucumis melo HOM05D006706 ORTHO05D008794 2.3e-52 209.5 186 61.8
Atru.chr7.2653 Acer truncatum HOM05D006706 ORTHO05D008794 3.0e-52 209.1 127 77.2
Dinv26561 Davidia involucrata HOM05D006706 ORTHO05D008794 3.0e-52 209.1 146 71.2
Glyma.04G075900 Glycine max HOM05D006706 ORTHO05D008794 3.0e-52 209.1 149 68.5
Nitab4.5_0001159g0140 Nicotiana tabacum HOM05D006706 ORTHO05D008794 3.0e-52 209.1 117 82.1
Duzib168G0001 Durio zibethinus HOM05D006706 ORTHO05D008794 4.0e-52 208.8 155 68.4
MSTRG.25780 Avicennia marina HOM05D006706 ORTHO05D008794 5.2e-52 208.4 157 66.9
Actinidia22256 Actinidia chinensis HOM05D006706 ORTHO05D008794 6.8e-52 208.0 198 56.1
AUR62020287 Chenopodium quinoa HOM05D006706 ORTHO05D008794 6.8e-52 208.0 133 74.4
Haze_21752 Corylus avellana HOM05D006706 ORTHO05D008794 6.8e-52 208.0 138 73.9
Lalb_Chr23g0269141 Lupinus albus HOM05D006706 ORTHO05D008794 6.8e-52 208.0 185 58.4
MD08G1127800 Malus domestica HOM05D006706 ORTHO05D008794 6.8e-52 208.0 184 61.4
arahy.Tifrunner.gnm1.ann1.92NGGW Arachis hypogaea HOM05D006706 ORTHO05D008794 8.8e-52 207.6 144 68.8
MBI14_g10732_MAGBIO Magnolia biondii HOM05D006706 ORTHO05D008794 1.2e-51 207.2 185 58.9
Oeu018568.1 Olea europaea HOM05D006706 ORTHO05D008794 1.2e-51 207.2 173 63.0
Aqoxy7G02908 Aquilegia oxysepala HOM05D006706 ORTHO05D008794 2.0e-51 206.5 177 58.8
Migut.A00436 Erythranthe guttata HOM05D006706 ORTHO05D008794 2.0e-51 206.5 147 68.7
Lsat_1_v5_gn_3_19441 Lactuca sativa HOM05D006706 ORTHO05D008794 2.0e-51 206.5 175 62.9
TWI34G0378 Tripterygium wilfordii HOM05D006706 ORTHO05D008794 2.0e-51 206.5 138 73.2
CSS0022194 Camellia sinensis var. sinensis HOM05D006706 ORTHO05D008794 2.6e-51 206.1 158 67.1
PSO170G0804 Papaver somniferum HOM05D006706 ORTHO05D008794 2.6e-51 206.1 144 69.4
Lj1g0012669 Lotus japonicus HOM05D006706 ORTHO05D008794 4.4e-51 205.3 187 59.9
Sed0007748 Sechium edule HOM05D006706 ORTHO05D008794 4.4e-51 205.3 172 62.2
vmacro05047 Vaccinium macrocarpon HOM05D006706 ORTHO05D008794 4.4e-51 205.3 132 76.5
ATR0580G320 Amborella trichopoda HOM05D006706 ORTHO05D008794 5.7e-51 204.9 117 81.2
CDE02G4751 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 5.7e-51 204.9 133 75.2
Glyma.06G077100 Glycine max HOM05D006706 ORTHO05D008794 5.7e-51 204.9 117 82.1
Medtr3g108900 Medicago truncatula HOM05D006706 ORTHO05D008794 5.7e-51 204.9 190 58.4
Nn3g19671 Nelumbo nucifera HOM05D006706 ORTHO05D008794 5.7e-51 204.9 128 77.3
Hund07113 Selenicereus undatus HOM05D006706 ORTHO05D008794 5.7e-51 204.9 128 75.8
ECA246G3311 Erigeron canadensis HOM05D006706 ORTHO05D008794 9.8e-51 204.1 132 74.2
DCAR_006314 Daucus carota HOM05D006706 ORTHO05D008794 2.2e-50 203.0 131 73.3
Phvul.009G101700 Phaseolus vulgaris HOM05D006706 ORTHO05D008794 3.7e-50 202.2 188 60.1
HanXRQChr17g0538031 Helianthus annuus HOM05D006706 ORTHO05D008794 9.1e-49 197.6 173 59.0
CiPaw.07G211900 Carya illinoinensis HOM05D006706 ORTHO05D008794 2.7e-48 196.1 127 73.2
Zm00001eb071580 Zea mays HOM05D006706 ORTHO05D008794 5.9e-48 194.9 131 69.5
Os04g0605200 Oryza sativa ssp. japonica HOM05D006706 ORTHO05D008794 1.3e-47 193.7 121 72.7
SEGI_18071 Sequoiadendron giganteum HOM05D006706 ORTHO05D008794 1.5e-46 190.3 118 72.9
AUR62037716 Chenopodium quinoa HOM05D006706 ORTHO05D008794 4.2e-46 188.7 168 61.9
Pp3c18_3890 Physcomitrium patens HOM05D006706 ORTHO05D008794 2.8e-45 186.0 156 55.8
HPP92_021967 Vanilla planifolia HOM05D006706 ORTHO05D008794 1.8e-44 183.3 130 67.7
HPP92_021941 Vanilla planifolia HOM05D006706 ORTHO05D008794 6.8e-44 181.4 130 66.9
AagrBONN_evm.TU.Sc2ySwM_228.645 Anthoceros agrestis HOM05D000036 ORTHO05D038461 1.5e-43 180.3 170 54.1
SGA_v2.0_scaffold193G40663 Striga asiatica HOM05D006706 ORTHO05D008794 1.7e-42 176.8 155 58.7
SMO203G0167 Selaginella moellendorffii HOM05D006706 ORTHO05D008794 6.3e-42 174.9 119 65.5
Mapoly0013s0161 Marchantia polymorpha HOM05D006706 ORTHO05D008794 1.1e-41 174.1 124 62.1
ClCG08G012660 Citrullus lanatus HOM05D006706 ORTHO05D008794 5.4e-41 171.8 136 64.0
Ah.10g024780 Amaranthus hybridus HOM05D006706 ORTHO05D008794 1.7e-39 166.8 121 67.8
MD15G1107200 Malus domestica HOM05D006706 ORTHO05D008794 2.5e-38 162.9 141 61.7
unitig_21.g20325 Utricularia gibba HOM05D006706 ORTHO05D008794 2.3e-36 156.4 150 51.3
Cre10.g449350 Chlamydomonas reinhardtii HOM05D006706 ORTHO05D008794 8.9e-36 154.5 145 53.1
MCO07G367 Micromonas commoda HOM05D006706 ORTHO05D008794 7.5e-35 151.4 128 55.5
A10p26910 Brassica napus HOM05D006706 ORTHO05D028018 2.9e-34 149.4 108 76.9
CBR_g3167 Chara braunii HOM05D006706 ORTHO05D008794 2.9e-34 149.4 133 54.1
Gohir.D06G107400 Gossypium hirsutum HOM05D006706 ORTHO05D008794 1.9e-22 110.2 122 54.9
Sc06g0000170 Simmondsia chinensis HOM05D006706 ORTHO05D008794 1.9e-22 110.2 129 46.5
Gohir.A06G105300 Gossypium hirsutum HOM05D006706 ORTHO05D008794 9.5e-22 107.8 122 54.1
EL10Ac2g02413 Beta vulgaris HOM05D006706 ORTHO05D008794 8.1e-21 104.8 60 80.0
Haze_27087 Corylus avellana HOM05D006706 ORTHO05D008794 8.9e-20 101.3 115 47.8
PRCOL_00004161 Prasinoderma coloniale HOM05D006706 ORTHO05D008794 1.5e-19 100.5 125 46.4
TAR636G3689 Trochodendron aralioides HOM05D006706 ORTHO05D008794 4.4e-19 99.0 57 78.9
CDE06G2578 Ceratophyllum demersum HOM05D006706 ORTHO05D008794 2.1e-16 90.1 76 61.8
BraA10t44742Z Brassica rapa HOM05D037374 ORTHO05D028018 8.6e-15 84.7 80 62.5
Sed0005624 Sechium edule HOM05D006706 ORTHO05D373521 1.9e-06 57.0 59 50.8


User provided reference genes

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