Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 8.1e-31 136.3 65 100.0
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 8.7e-17 89.7 65 67.7
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 2.5e-16 88.2 46 87.0
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 2.5e-16 88.2 46 91.3
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 5.7e-16 87.0 46 89.1
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 1.3e-15 85.9 46 89.1
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 1.6e-15 85.5 49 81.6
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 2.1e-15 85.1 46 89.1
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 6.3e-15 83.6 49 81.6
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 8.2e-15 83.2 49 81.6
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 8.2e-15 83.2 49 81.6
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 8.2e-15 83.2 54 75.9
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 8.2e-15 83.2 49 79.6
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 2.4e-14 81.6 46 84.8
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 2.4e-14 81.6 46 84.8
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 2.4e-14 81.6 49 75.5
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 2.4e-14 81.6 49 75.5
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 3.1e-14 81.3 49 79.6
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 5.3e-14 80.5 49 75.5
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 5.3e-14 80.5 49 73.5
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 6.9e-14 80.1 46 82.6
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 6.9e-14 80.1 46 82.6
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 6.9e-14 80.1 49 73.5
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 1.2e-13 79.3 46 82.6
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 1.2e-13 79.3 46 80.4
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.2e-13 79.3 49 77.6
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 1.5e-13 79.0 46 82.6
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 1.5e-13 79.0 49 73.5
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 1.5e-13 79.0 49 75.5
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 1.5e-13 79.0 49 73.5
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 2.0e-13 78.6 49 77.6
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 2.0e-13 78.6 46 78.3
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 2.6e-13 78.2 49 75.5
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 2.6e-13 78.2 49 71.4
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 2.6e-13 78.2 49 77.6
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 2.6e-13 78.2 48 72.9
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 3.4e-13 77.8 49 71.4
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 3.4e-13 77.8 49 77.6
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 5.9e-13 77.0 49 73.5
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 5.9e-13 77.0 49 71.4
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 5.9e-13 77.0 49 71.4
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 5.9e-13 77.0 49 71.4
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 7.6e-13 76.6 46 78.3
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 7.6e-13 76.6 46 78.3
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 7.6e-13 76.6 49 71.4
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 7.6e-13 76.6 46 73.9
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 7.6e-13 76.6 49 77.6
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 7.6e-13 76.6 49 71.4
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 1.0e-12 76.3 49 71.4
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 1.7e-12 75.5 46 73.9
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 2.2e-12 75.1 46 71.7
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 2.2e-12 75.1 49 67.3
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 2.2e-12 75.1 50 66.0
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 2.2e-12 75.1 46 73.9
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 2.2e-12 75.1 46 73.9
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 2.9e-12 74.7 46 69.6
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 3.8e-12 74.3 46 71.7
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 3.8e-12 74.3 46 71.7
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 3.8e-12 74.3 49 69.4
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 3.8e-12 74.3 46 71.7
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 5.0e-12 73.9 49 71.4
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 5.0e-12 73.9 46 71.7
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 5.0e-12 73.9 45 73.3
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 5.0e-12 73.9 49 69.4
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 6.5e-12 73.6 66 53.0
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 8.4e-12 73.2 49 69.4
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 1.1e-11 72.8 46 71.7
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 1.9e-11 72.0 46 71.7
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 3.2e-11 71.2 45 73.3
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 3.2e-11 71.2 46 69.6
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 4.2e-11 70.9 49 65.3
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 4.2e-11 70.9 49 69.4
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 4.2e-11 70.9 49 67.3
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 5.5e-11 70.5 46 67.4
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 9.3e-11 69.7 46 67.4
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 1.2e-10 69.3 46 69.6
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 1.2e-10 69.3 46 69.6
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 1.2e-10 69.3 49 67.3
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 3.5e-10 67.8 50 66.0
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 4.6e-10 67.4 45 68.9
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 4.6e-10 67.4 49 65.3
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 6.1e-10 67.0 46 67.4
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 1.8e-09 65.5 46 63.0
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 2.3e-09 65.1 46 63.0
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 2.3e-09 65.1 51 58.8
Lj7A276T16 Lonicera japonica HOM05D006276 ORTHO05D007724 2.3e-09 65.1 50 58.0
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 3.0e-09 64.7 46 65.2
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 1.1e-08 62.8 48 60.4
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 2.5e-08 61.6 45 64.4
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 7.4e-08 60.1 49 59.2
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 7.4e-08 60.1 48 60.4
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 9.7e-08 59.7 50 62.0
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 9.7e-08 59.7 46 60.9
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 9.7e-08 59.7 46 58.7
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 1.3e-07 59.3 46 60.9
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 1.6e-07 58.9 46 60.9
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 1.6e-07 58.9 45 55.6
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 2.2e-07 58.5 46 58.7
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 2.8e-07 58.2 44 63.6
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 3.7e-07 57.8 46 58.7
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 8.2e-07 56.6 46 56.5
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 4.1e-06 54.3 41 61.0


User provided reference genes

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