Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR200840 Cardamine hirsuta HOM05D004906 ORTHO05D005926 8.1e-202 706.8 351 100.0
AT5G12260 Arabidopsis thaliana HOM05D004906 ORTHO05D005926 1.4e-180 636.3 348 89.1
AL6G23070 Arabidopsis lyrata HOM05D004906 ORTHO05D005926 3.3e-179 631.7 355 87.3
Sp6g31380 Schrenkiella parvula HOM05D004906 ORTHO05D005926 1.5e-171 606.3 358 83.5
BolC9t59294H Brassica oleracea HOM05D004906 ORTHO05D005926 3.3e-171 605.1 352 83.8
BraA10t44617Z Brassica rapa HOM05D004906 ORTHO05D005926 4.4e-171 604.7 352 83.2
Thhalv10012969m.g Eutrema salsugineum HOM05D004906 ORTHO05D005926 4.4e-171 604.7 357 83.5
A10p25530 Brassica napus HOM05D004906 ORTHO05D005926 1.3e-170 603.2 352 83.2
C09p64610 Brassica napus HOM05D004906 ORTHO05D005926 1.8e-169 599.4 352 83.0
Sp6g31370 Schrenkiella parvula HOM05D004906 ORTHO05D005926 6.5e-167 590.9 355 82.3
Thhalv10028084m.g Eutrema salsugineum HOM05D004906 ORTHO05D005926 2.8e-162 575.5 358 79.1
Aa31LG3G14960 Aethionema arabicum HOM05D004906 ORTHO05D005926 1.5e-155 553.1 361 76.2
BcaNung06216 Brassica carinata HOM05D004906 ORTHO05D005926 3.7e-154 548.5 354 76.3
BraA03t09888Z Brassica rapa HOM05D004906 ORTHO05D005926 5.0e-143 511.5 354 72.9
A03p05500 Brassica napus HOM05D004906 ORTHO05D005926 1.9e-142 509.6 354 72.9
THA.LOC104811206 Tarenaya hassleriana HOM05D004906 ORTHO05D005926 3.1e-132 475.7 358 67.3
BcaB01g05413 Brassica carinata HOM05D004906 ORTHO05D005926 1.9e-129 466.5 359 67.7
BolC3t13148H Brassica oleracea HOM05D004906 ORTHO05D005926 2.0e-115 419.9 309 70.9
Cpa.g.sc34.192 Carica papaya HOM05D004906 ORTHO05D005926 4.7e-109 398.7 360 53.1
Dinv29317 Davidia involucrata HOM05D004906 ORTHO05D005926 5.2e-108 395.2 365 53.2
Thecc.09G253700 Theobroma cacao HOM05D004906 ORTHO05D005926 5.2e-108 395.2 360 53.1
Actinidia06985 Actinidia chinensis HOM05D004906 ORTHO05D005926 4.4e-107 392.1 357 54.1
GSVIVG01000077001 Vitis vinifera HOM05D004906 ORTHO05D005926 1.3e-106 390.6 368 52.4
Ciclev10014615m.g Citrus clementina HOM05D004906 ORTHO05D005926 1.7e-106 390.2 362 53.6
C03p06420 Brassica napus HOM05D004906 ORTHO05D005926 3.8e-106 389.0 354 60.5
TWI79G0625 Tripterygium wilfordii HOM05D004906 ORTHO05D005926 1.1e-105 387.5 358 53.9
Rhsim13G0204200 Rhododendron simsii HOM05D004906 ORTHO05D005926 7.1e-105 384.8 365 51.0
QL01p016300 Quercus lobata HOM05D004906 ORTHO05D005926 1.6e-104 383.6 364 52.2
TWI31G0720 Tripterygium wilfordii HOM05D004906 ORTHO05D005926 1.6e-104 383.6 359 51.3
Atru.chr12.1308 Acer truncatum HOM05D004906 ORTHO05D005926 4.6e-104 382.1 362 51.7
Eucgr.J00670 Eucalyptus grandis HOM05D004906 ORTHO05D005926 7.8e-104 381.3 364 51.1
Gorai.009G076700 Gossypium raimondii HOM05D004906 ORTHO05D005926 5.1e-103 378.6 360 51.1
RcHm_v2.0_Chr1g0336841 Rosa chinensis HOM05D004906 ORTHO05D005926 6.6e-103 378.3 361 50.4
TAR623G1747 Trochodendron aralioides HOM05D004906 ORTHO05D005926 6.6e-103 378.3 365 51.0
Manes.14G139200 Manihot esculenta HOM05D004906 ORTHO05D005926 5.6e-102 375.2 361 51.2
Prupe.1G051200 Prunus persica HOM05D004906 ORTHO05D005926 2.1e-101 373.2 360 50.0
FvH4_7g06910 Fragaria vesca HOM05D004906 ORTHO05D005926 2.8e-101 372.9 361 49.9
Potri.009G066900 Populus trichocarpa HOM05D004906 ORTHO05D005926 3.6e-101 372.5 361 51.8
Cfa009918 Carpinus fangiana HOM05D004906 ORTHO05D005926 1.1e-100 370.9 359 49.6
FAN06G2810 Fragaria x ananassa HOM05D004906 ORTHO05D005926 1.4e-100 370.5 361 49.6
Carub.0006s1078 Capsella rubella HOM05D004906 ORTHO05D005926 3.1e-100 369.4 229 82.5
COL.COLO4_06626 Corchorus olitorius HOM05D004906 ORTHO05D005926 5.3e-100 368.6 360 50.3
Hma1.2p1_0811F.1_g222140 Hydrangea macrophylla HOM05D004906 ORTHO05D005926 6.9e-100 368.2 358 50.3
CSS0023910 Camellia sinensis var. sinensis HOM05D004906 ORTHO05D005926 9.0e-100 367.9 365 48.8
Hund07413 Selenicereus undatus HOM05D004906 ORTHO05D005926 1.5e-99 367.1 356 49.4
Sabra09G0049800 Salix brachista HOM05D004906 ORTHO05D005926 9.9e-99 364.4 361 51.5
MD13G1224500 Malus domestica HOM05D004906 ORTHO05D005926 1.3e-98 364.0 354 49.7
MD10G1340300 Malus domestica HOM05D004906 ORTHO05D005926 2.2e-98 363.2 352 49.7
CANSAT54G2831 Cannabis sativa HOM05D004906 ORTHO05D005926 3.8e-98 362.5 359 49.6
Sabra16G0167700 Salix brachista HOM05D004906 ORTHO05D005926 1.1e-97 360.9 362 50.0
Sc09g0001150 Simmondsia chinensis HOM05D004906 ORTHO05D005926 3.2e-97 359.4 356 50.8
EL10Ac4g10081 Beta vulgaris HOM05D004906 ORTHO05D005926 4.2e-97 359.0 362 47.8
RcHm_v2.0_Chr7g0223431 Rosa chinensis HOM05D004906 ORTHO05D005926 4.2e-97 359.0 361 48.2
Potri.001G272400 Populus trichocarpa HOM05D004906 ORTHO05D005926 1.2e-96 357.5 361 49.6
Lj4A832T45 Lonicera japonica HOM05D004906 ORTHO05D005926 1.6e-96 357.1 370 48.4
Aqoxy1G00419 Aquilegia oxysepala HOM05D004906 ORTHO05D005926 6.0e-96 355.1 363 48.5
AUR62006570 Chenopodium quinoa HOM05D004906 ORTHO05D005926 7.8e-96 354.8 361 47.9
Ca_23430_v3 Cicer arietinum L. HOM05D004906 ORTHO05D005926 1.7e-95 353.6 364 48.9
AUR62000224 Chenopodium quinoa HOM05D004906 ORTHO05D005926 2.3e-95 353.2 361 47.6
FAN08G1833 Fragaria x ananassa HOM05D004906 ORTHO05D005926 3.9e-95 352.4 362 48.3
CsaV3_6G038760 Cucumis sativus L. HOM05D004906 ORTHO05D005926 5.1e-95 352.1 362 49.7
FvH4_5g29830 Fragaria vesca HOM05D004906 ORTHO05D005926 5.1e-95 352.1 362 47.5
Lj6A106G22 Lonicera japonica HOM05D004906 ORTHO05D005926 6.6e-95 351.7 371 46.1
arahy.Tifrunner.gnm1.ann1.U80ME1 Arachis hypogaea HOM05D004906 ORTHO05D005926 8.7e-95 351.3 359 47.4
Lj3g0015121 Lotus japonicus HOM05D004906 ORTHO05D005926 8.7e-95 351.3 363 47.9
CiPaw.13G147500 Carya illinoinensis HOM05D004906 ORTHO05D005926 1.1e-94 350.9 353 48.4
MELO3C014538.2 Cucumis melo HOM05D004906 ORTHO05D005926 1.1e-94 350.9 362 49.4
FAN18G3162 Fragaria x ananassa HOM05D004906 ORTHO05D005926 1.9e-94 350.1 362 47.2
Ah.06g194850 Amaranthus hybridus HOM05D004906 ORTHO05D005926 3.3e-94 349.4 361 46.8
MBI13_g07374_MAGBIO Magnolia biondii HOM05D004906 ORTHO05D005926 3.3e-94 349.4 363 47.4
arahy.Tifrunner.gnm1.ann1.4M7FUH Arachis hypogaea HOM05D004906 ORTHO05D005926 4.3e-94 349.0 359 46.8
FAN13G0138 Fragaria x ananassa HOM05D004906 ORTHO05D005926 5.6e-94 348.6 362 47.5
Medtr8g023050 Medicago truncatula HOM05D004906 ORTHO05D005926 5.6e-94 348.6 363 47.7
Sed0008510 Sechium edule HOM05D004906 ORTHO05D005926 5.6e-94 348.6 362 48.1
ClCG02G022640 Citrullus lanatus HOM05D004906 ORTHO05D005926 2.8e-93 346.3 364 48.6
MD13G1224600 Malus domestica HOM05D004906 ORTHO05D005926 8.1e-93 344.7 354 48.6
Oeu025917.1 Olea europaea HOM05D004906 ORTHO05D005926 4.0e-92 342.4 363 48.2
DCAR_031616 Daucus carota HOM05D004906 ORTHO05D005926 6.9e-92 341.7 364 45.6
Glyma.07G045400 Glycine max HOM05D004906 ORTHO05D005926 3.4e-91 339.3 363 46.8
PGR102G2398 Punica granatum HOM05D004906 ORTHO05D005926 9.9e-91 337.8 365 48.2
HanXRQChr03g0091561 Helianthus annuus HOM05D004906 ORTHO05D005926 2.2e-90 336.7 361 47.4
Lsat_1_v5_gn_3_117120 Lactuca sativa HOM05D004906 ORTHO05D005926 2.2e-90 336.7 350 47.4
Solyc11g062360.2 Solanum lycopersicum HOM05D004906 ORTHO05D005926 2.2e-90 336.7 364 45.3
TPR.G18167 Trifolium pratense HOM05D004906 ORTHO05D005926 2.2e-90 336.7 360 46.1
Glyma.16G013300 Glycine max HOM05D004906 ORTHO05D005926 2.9e-90 336.3 359 48.5
PSO566G0107 Papaver somniferum HOM05D004906 ORTHO05D005926 4.9e-90 335.5 361 47.1
Peaxi162Scf00029g02411 Petunia axillaris HOM05D004906 ORTHO05D005926 4.9e-90 335.5 364 46.2
Phvul.010G072800 Phaseolus vulgaris HOM05D004906 ORTHO05D005926 4.9e-90 335.5 363 45.7
SalBow6G0163 Salvia bowleyana HOM05D004906 ORTHO05D005926 4.9e-90 335.5 360 47.2
PGSC0003DMG400032507 Solanum tuberosum HOM05D004906 ORTHO05D005926 6.4e-90 335.1 364 45.3
Sopen11g024360 Solanum pennellii HOM05D004906 ORTHO05D005926 8.4e-90 334.7 364 45.6
Psat4g165720 Pisum sativum HOM05D004906 ORTHO05D005926 1.4e-89 334.0 363 46.0
VMungo0540G0727 Vigna mungo HOM05D004906 ORTHO05D005926 1.4e-89 334.0 358 47.8
Lalb_Chr17g0343281 Lupinus albus HOM05D004906 ORTHO05D005926 1.9e-89 333.6 367 46.6
SGA_v2.0_scaffold3G01435 Striga asiatica HOM05D004906 ORTHO05D005926 2.4e-89 333.2 363 46.0
Nitab4.5_0000492g0170 Nicotiana tabacum HOM05D004906 ORTHO05D005926 7.1e-89 331.6 364 46.2
ECA240G3817 Erigeron canadensis HOM05D004906 ORTHO05D005926 1.2e-88 330.9 357 45.9
Nitab4.5_0002026g0120 Nicotiana tabacum HOM05D004906 ORTHO05D005926 1.2e-88 330.9 365 45.5
MSTRG.12434 Avicennia marina HOM05D004906 ORTHO05D005926 1.6e-88 330.5 364 44.5
Gohir.A05G072500 Gossypium hirsutum HOM05D004906 ORTHO05D005926 1.6e-88 330.5 360 46.1
Gohir.D05G075300 Gossypium hirsutum HOM05D004906 ORTHO05D005926 1.6e-88 330.5 360 46.1
PSO782G1935 Papaver somniferum HOM05D004906 ORTHO05D005926 1.0e-87 327.8 361 46.3
ECA240G2886 Erigeron canadensis HOM05D004906 ORTHO05D005926 2.3e-87 326.6 357 46.8
Cc01_g06610 Coffea canephora HOM05D004906 ORTHO05D005926 8.7e-87 324.7 364 44.5
Nn5g28862 Nelumbo nucifera HOM05D004906 ORTHO05D005926 3.7e-85 319.3 346 46.5
Haze_23276 Corylus avellana HOM05D004906 ORTHO05D005926 4.5e-83 312.4 361 43.5
unitig_699.g19150 Utricularia gibba HOM05D004906 ORTHO05D005926 1.1e-81 307.8 359 42.1
Zm00001eb129370 Zea mays HOM05D004906 ORTHO05D005926 2.5e-81 306.6 366 42.1
Os01g0283000 Oryza sativa ssp. japonica HOM05D004906 ORTHO05D005926 2.7e-80 303.1 360 43.1
SHI24959 Sapria himalayana HOM05D004906 ORTHO05D005926 6.2e-77 292.0 363 42.1
HPP92_025126 Vanilla planifolia HOM05D004906 ORTHO05D005926 1.1e-76 291.2 363 39.9
CDE08G1453 Ceratophyllum demersum HOM05D004906 ORTHO05D005926 1.8e-76 290.4 356 41.9
FAN10G0972 Fragaria x ananassa HOM05D004906 ORTHO05D005926 6.9e-76 288.5 348 43.1
SGA_v2.0_scaffold26G11394 Striga asiatica HOM05D004906 ORTHO05D005926 1.5e-75 287.3 351 41.9
ATR0745G074 Amborella trichopoda HOM05D004906 ORTHO05D005926 1.0e-74 284.6 364 39.8
arahy.Tifrunner.gnm1.ann1.7BKA07 Arachis hypogaea HOM05D004906 ORTHO05D005926 1.3e-74 284.3 287 46.7
Migut.N02384 Erythranthe guttata HOM05D004906 ORTHO05D005926 1.2e-72 277.7 324 43.8
SEGI_13581 Sequoiadendron giganteum HOM05D004906 ORTHO05D005926 2.5e-70 270.0 370 40.5
FAN03G0457 Fragaria x ananassa HOM05D004906 ORTHO05D005926 7.4e-70 268.5 353 41.6
Ciclev10017537m.g Citrus clementina HOM05D004906 ORTHO05D005926 1.2e-64 251.1 331 43.8
ATR0307G068 Amborella trichopoda HOM05D004906 ORTHO05D005926 1.7e-58 230.7 258 43.8
Duzib150G1150 Durio zibethinus HOM05D004906 ORTHO05D005926 2.2e-58 230.3 360 36.1
BcaNung06730 Brassica carinata HOM05D004906 ORTHO05D005926 8.8e-55 218.4 118 86.4
Actinidia24474 Actinidia chinensis HOM05D004906 ORTHO05D005926 5.0e-50 202.6 304 41.4
Lj6C105G1 Lonicera japonica HOM05D004906 ORTHO05D005926 1.9e-49 200.7 367 32.4
FAN01G0016 Fragaria x ananassa HOM05D004906 ORTHO05D005926 2.8e-45 186.8 304 35.2
Pp3c3_19100 Physcomitrium patens HOM05D004906 ORTHO05D005926 8.2e-45 185.3 364 31.9
Carub.0006s1077 Capsella rubella HOM05D004906 ORTHO05D005926 2.3e-39 167.2 82 93.9
SMO358G0189 Selaginella moellendorffii HOM05D004906 ORTHO05D005926 2.3e-39 167.2 169 45.6
Mapoly0001s0235 Marchantia polymorpha HOM05D004906 ORTHO05D005926 6.8e-39 165.6 362 28.5
Potri.012G121826 Populus trichocarpa HOM05D004906 ORTHO05D005926 1.5e-38 164.5 152 49.3
CiPaw.14G109800 Carya illinoinensis HOM05D004906 ORTHO05D005926 3.4e-30 136.7 82 73.2
A02p01440 Brassica napus HOM05D004906 ORTHO05D040706 3.0e-23 113.6 87 72.4
BraA02t05123Z Brassica rapa HOM05D004906 ORTHO05D040706 3.0e-23 113.6 87 72.4
Oeu061691.1 Olea europaea HOM05D004906 ORTHO05D005926 1.9e-12 77.8 41 73.2
CBR_g22918 Chara braunii HOM05D004906 ORTHO05D005926 1.9e-09 67.8 94 34.0
BolC2t06510H Brassica oleracea HOM05D000059 ORTHO05D000128 5.8e-06 56.2 43 69.8


User provided reference genes

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