Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 3.1e-188 661.8 365 100.0
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 1.5e-158 563.1 366 85.0
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 1.7e-154 549.7 366 79.8
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 7.3e-153 544.3 366 81.7
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 9.5e-153 543.9 367 81.7
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 9.5e-153 543.9 367 81.7
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 1.4e-151 540.0 369 83.7
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 4.1e-148 528.5 379 79.2
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 1.2e-147 526.9 403 77.7
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 4.6e-147 525.0 368 81.0
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 5.6e-145 518.1 388 77.1
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 3.6e-144 515.4 367 79.3
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 1.1e-140 503.8 353 76.8
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 2.6e-134 482.6 379 73.9
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 2.1e-128 463.0 417 65.7
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 6.8e-127 458.0 353 73.7
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 2.4e-119 433.0 364 66.8
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 1.7e-114 416.8 380 62.6
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 3.0e-114 416.0 380 62.6
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 8.1e-112 407.9 368 63.6
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 1.8e-111 406.8 370 62.7
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.3e-111 405.2 385 60.8
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 6.9e-111 404.8 369 61.2
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 4.5e-110 402.1 380 61.6
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 7.6e-110 401.4 368 61.7
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.3e-109 400.6 364 59.1
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 2.2e-109 399.8 368 62.0
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 3.8e-109 399.1 368 61.4
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 4.9e-109 398.7 371 61.7
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 5.4e-108 395.2 379 58.8
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 1.0e-106 391.0 372 60.5
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 3.0e-106 389.4 368 58.4
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 3.0e-106 389.4 359 61.3
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 5.1e-106 388.7 433 54.0
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 8.7e-106 387.9 363 65.0
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 8.7e-106 387.9 403 56.8
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 1.5e-105 387.1 394 55.1
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 1.6e-104 383.6 369 61.8
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 2.8e-104 382.9 382 56.5
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 6.2e-104 381.7 363 60.1
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.4e-103 380.6 361 61.2
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 1.4e-103 380.6 382 57.9
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 1.4e-103 380.6 425 52.9
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 1.8e-103 380.2 388 58.5
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 3.1e-103 379.4 363 60.1
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 4.0e-103 379.0 361 59.0
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 5.3e-103 378.6 386 55.4
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.0e-102 376.7 361 59.3
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 3.4e-102 375.9 384 57.8
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 4.5e-102 375.6 377 58.4
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 5.8e-102 375.2 367 56.9
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 5.8e-102 375.2 366 60.1
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 7.6e-102 374.8 366 56.0
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 7.6e-102 374.8 371 59.3
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 1.7e-101 373.6 377 56.2
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 2.9e-101 372.9 366 58.2
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 3.8e-101 372.5 406 54.7
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 4.9e-101 372.1 354 61.9
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 6.5e-101 371.7 362 57.2
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 8.4e-101 371.3 363 59.2
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 1.1e-100 370.9 366 58.7
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 3.2e-100 369.4 375 59.2
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 4.2e-100 369.0 449 49.0
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 7.1e-100 368.2 362 58.0
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 7.1e-100 368.2 370 59.7
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 1.6e-99 367.1 361 59.6
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 2.1e-99 366.7 371 59.6
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 2.1e-99 366.7 373 58.2
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.3e-98 364.0 359 57.1
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 1.8e-98 363.6 374 58.6
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 3.0e-98 362.8 435 51.0
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 3.0e-98 362.8 365 56.2
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 6.7e-98 361.7 370 55.7
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 1.1e-97 360.9 370 57.6
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 2.5e-97 359.8 388 53.6
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 2.5e-97 359.8 359 58.8
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 3.3e-97 359.4 383 54.0
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 4.3e-97 359.0 367 57.5
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 9.6e-97 357.8 395 52.9
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 1.6e-96 357.1 353 58.4
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 2.1e-96 356.7 359 56.0
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 2.1e-96 356.7 390 54.6
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 2.8e-96 356.3 395 51.9
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 2.8e-96 356.3 389 54.5
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 2.4e-95 353.2 355 57.5
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 5.8e-94 348.6 360 54.4
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 2.5e-92 343.2 362 53.9
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 3.2e-92 342.8 363 57.0
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 1.2e-91 340.9 376 51.1
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 1.0e-90 337.8 385 54.3
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 1.3e-90 337.4 376 50.0
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 1.1e-89 334.3 359 56.0
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 4.1e-87 325.9 388 48.7
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 5.3e-87 325.5 444 46.6
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 1.2e-86 324.3 362 51.4
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 1.0e-85 321.2 361 49.3
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 1.8e-82 310.5 333 57.4
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 3.9e-82 309.3 363 54.0
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.1e-81 307.8 322 58.4
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 3.3e-81 306.2 314 57.3
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 3.3e-81 306.2 391 48.6
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 9.7e-81 304.7 363 53.4
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 5.0e-77 292.4 316 54.1
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 7.9e-75 285.0 363 46.3
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.0e-69 268.1 162 77.8
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 7.5e-57 225.3 143 74.8
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 2.5e-52 210.3 135 70.4
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 2.8e-48 196.8 280 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 1.7e-45 187.6 365 34.0
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 1.7e-45 187.6 364 34.3
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 1.1e-44 184.9 338 36.4
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 5.6e-44 182.6 361 33.0
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 1.3e-40 171.4 357 33.6
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 2.2e-40 170.6 111 72.1
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 5.2e-34 149.4 84 85.7
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 1.5e-28 131.3 237 33.8
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 2.6e-25 120.6 84 70.2
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 1.3e-24 118.2 179 37.4
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 1.3e-21 108.2 199 33.7
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 8.6e-21 105.5 64 78.1
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 7.3e-20 102.4 56 89.3
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 8.9e-18 95.5 205 35.6
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 1.7e-16 91.3 170 34.1
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 3.7e-16 90.1 57 73.7
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 5.4e-15 86.3 59 71.2


User provided reference genes

Program Settings