Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 9.7e-33 142.9 73 100.0
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 8.5e-29 129.8 73 86.3
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 8.0e-27 123.2 72 83.3
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 3.4e-25 117.9 72 79.2
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 2.2e-24 115.2 68 85.3
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 1.4e-23 112.5 73 74.0
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 1.8e-23 112.1 73 75.3
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 4.1e-23 110.9 73 74.0
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 5.4e-23 110.5 73 72.6
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 3.5e-22 107.8 72 72.2
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 4.5e-22 107.5 73 74.0
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 4.5e-22 107.5 73 71.2
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 5.9e-22 107.1 72 70.8
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 5.9e-22 107.1 73 72.6
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 7.7e-22 106.7 72 69.4
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 7.7e-22 106.7 71 71.8
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 1.0e-21 106.3 72 69.4
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 1.0e-21 106.3 72 70.8
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 1.0e-21 106.3 71 71.8
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 1.7e-21 105.5 73 72.6
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 3.8e-21 104.4 71 73.2
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 5.0e-21 104.0 74 70.3
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 5.0e-21 104.0 64 76.6
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 6.6e-21 103.6 74 70.3
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 6.6e-21 103.6 74 70.3
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 6.6e-21 103.6 71 71.8
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 6.6e-21 103.6 73 71.2
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 8.6e-21 103.2 73 72.6
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 1.5e-20 102.4 73 69.9
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 1.9e-20 102.1 74 68.9
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 1.9e-20 102.1 73 69.9
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 2.5e-20 101.7 74 68.9
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 2.5e-20 101.7 73 69.9
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 3.3e-20 101.3 53 90.6
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 3.3e-20 101.3 53 90.6
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 3.3e-20 101.3 74 68.9
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 4.2e-20 100.9 64 76.6
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 4.2e-20 100.9 64 76.6
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 5.5e-20 100.5 74 68.9
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 5.5e-20 100.5 72 68.1
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 5.5e-20 100.5 73 71.2
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 7.2e-20 100.1 74 67.6
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 7.2e-20 100.1 63 76.2
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 7.2e-20 100.1 72 68.1
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 7.2e-20 100.1 72 68.1
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 9.5e-20 99.8 71 69.0
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 1.6e-19 99.0 71 66.2
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 2.1e-19 98.6 72 65.3
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 2.1e-19 98.6 72 65.3
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 2.8e-19 98.2 74 67.6
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 4.7e-19 97.4 64 71.9
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 8.0e-19 96.7 73 67.1
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 8.0e-19 96.7 71 69.0
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 1.4e-18 95.9 73 65.8
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 1.4e-18 95.9 73 65.8
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 1.8e-18 95.5 73 65.8
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 2.3e-18 95.1 72 66.7
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 3.0e-18 94.7 72 68.1
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 6.8e-18 93.6 73 63.0
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 8.9e-18 93.2 72 65.3
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.2e-17 92.8 85 58.8
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 1.2e-17 92.8 72 62.5
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.2e-17 92.8 71 64.8
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 2.6e-17 91.7 67 68.7
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 3.4e-17 91.3 72 66.7
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 5.7e-17 90.5 74 64.9
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 2.2e-16 88.6 71 64.8
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 4.9e-16 87.4 72 61.1
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 4.9e-16 87.4 72 61.1
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 8.3e-16 86.7 71 56.3
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.4e-15 85.9 59 71.2
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 1.6e-14 82.4 73 60.3
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 3.9e-13 77.8 58 67.2
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 5.0e-13 77.4 58 65.5
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 6.6e-13 77.0 71 52.1
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 8.6e-13 76.6 76 56.6
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 1.5e-12 75.9 71 53.5
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 1.4e-10 69.3 71 49.3
Aa31LG3G11430 Aethionema arabicum HOM05D007721 ORTHO05D009811 9.8e-09 63.2 46 67.4
SGA_v2.0_scaffold7G04151 Striga asiatica HOM05D000252 ORTHO05D000307 1.4e-07 59.3 43 67.4
TWI34G0772 Tripterygium wilfordii HOM05D007721 ORTHO05D009811 1.2e-06 56.2 41 61.0
HanXRQChr04g0118971 Helianthus annuus HOM05D007721 ORTHO05D009811 3.5e-06 54.7 47 57.4


User provided reference genes

Program Settings