Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 2.7e-103 378.6 184 100.0
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 3.3e-101 371.7 184 97.3
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 9.5e-101 370.2 184 96.2
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 2.8e-100 368.6 184 95.1
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 8.0e-100 367.1 184 96.2
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 1.4e-99 366.3 184 94.6
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 1.4e-99 366.3 184 94.6
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 1.4e-99 366.3 184 94.6
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 2.3e-99 365.5 184 95.7
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 2.3e-99 365.5 184 96.2
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 3.0e-99 365.2 184 94.0
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 5.2e-99 364.4 184 94.0
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 5.7e-98 360.9 184 92.9
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 2.8e-97 358.6 184 92.9
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 3.7e-97 358.2 184 92.9
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 4.9e-97 357.8 183 92.3
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 4.5e-95 351.3 184 90.8
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 4.5e-95 351.3 184 90.8
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 2.9e-94 348.6 183 89.6
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 6.8e-91 337.4 183 85.2
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 1.7e-89 332.8 183 83.6
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 4.9e-89 331.3 181 85.1
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 6.4e-89 330.9 181 85.1
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 8.3e-89 330.5 181 84.5
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 1.1e-88 330.1 183 83.6
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.9e-88 329.3 183 82.0
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 1.9e-88 329.3 183 83.1
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 2.4e-88 328.9 181 84.5
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 3.2e-88 328.6 183 82.5
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 3.2e-88 328.6 181 83.4
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 3.2e-88 328.6 183 81.4
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.4e-88 327.8 181 81.2
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.4e-88 327.8 181 81.2
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 7.0e-88 327.4 183 81.4
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 7.0e-88 327.4 183 83.1
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 7.0e-88 327.4 183 82.0
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 9.2e-88 327.0 183 81.4
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 9.2e-88 327.0 183 82.5
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 9.2e-88 327.0 183 82.0
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 9.2e-88 327.0 183 82.0
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 9.2e-88 327.0 183 81.4
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 1.2e-87 326.6 183 82.0
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.6e-87 326.2 183 83.1
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 2.0e-87 325.9 181 82.3
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 2.0e-87 325.9 183 82.0
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 2.7e-87 325.5 183 83.1
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 3.5e-87 325.1 183 81.4
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 3.5e-87 325.1 183 81.4
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 4.6e-87 324.7 183 82.0
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 6.0e-87 324.3 183 83.1
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 6.0e-87 324.3 183 81.4
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 1.0e-86 323.6 183 82.0
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 1.0e-86 323.6 183 79.8
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 1.7e-86 322.8 183 82.0
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 2.3e-86 322.4 180 81.1
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 3.0e-86 322.0 180 83.3
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 5.0e-86 321.2 181 81.8
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 5.0e-86 321.2 183 80.3
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 6.6e-86 320.9 181 81.8
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 6.6e-86 320.9 181 80.7
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 1.5e-85 319.7 181 81.2
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 1.5e-85 319.7 181 81.8
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 1.9e-85 319.3 181 80.1
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 2.5e-85 318.9 183 80.9
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 2.5e-85 318.9 183 81.4
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 4.3e-85 318.2 180 81.1
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 4.3e-85 318.2 183 80.9
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 5.6e-85 317.8 181 81.2
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 5.6e-85 317.8 183 80.9
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 5.6e-85 317.8 183 80.9
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 7.3e-85 317.4 183 80.9
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 9.5e-85 317.0 183 79.8
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 9.5e-85 317.0 180 81.1
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 1.2e-84 316.6 178 82.0
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.2e-84 316.6 183 79.8
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 2.1e-84 315.8 174 84.5
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 2.1e-84 315.8 180 80.0
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 2.1e-84 315.8 180 80.0
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 3.6e-84 315.1 180 80.0
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 4.7e-84 314.7 183 78.7
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 4.7e-84 314.7 183 78.7
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 6.2e-84 314.3 181 79.0
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 1.1e-83 313.5 183 79.2
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 1.8e-83 312.8 183 79.2
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 2.3e-83 312.4 183 79.2
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 3.1e-83 312.0 181 77.9
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 3.1e-83 312.0 183 78.7
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 4.0e-83 311.6 183 78.7
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.2e-82 310.1 183 77.6
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.2e-82 310.1 180 80.0
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 2.0e-82 309.3 180 79.4
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.0e-82 309.3 180 79.4
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.0e-82 309.3 172 84.3
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 2.6e-82 308.9 183 77.6
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 4.4e-82 308.1 183 77.0
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 4.4e-82 308.1 183 77.0
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.3e-81 306.6 183 76.5
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 3.7e-81 305.1 180 78.3
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.1e-80 303.5 180 78.9
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 1.4e-80 303.1 181 76.8
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 1.9e-80 302.8 182 75.3
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 3.2e-80 302.0 181 76.2
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 3.2e-80 302.0 180 77.2
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 1.2e-79 300.1 181 77.3
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 3.5e-79 298.5 182 74.2
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 7.8e-79 297.4 181 79.0
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 2.3e-78 295.8 180 73.3
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 2.8e-76 288.9 181 74.0
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 6.2e-76 287.7 183 72.7
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 6.2e-76 287.7 181 72.9
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 3.1e-75 285.4 181 72.4
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 1.2e-74 283.5 181 72.4
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 4.4e-74 281.6 181 71.3
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.3e-73 280.0 173 72.3
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 2.9e-73 278.9 181 70.7
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 3.7e-73 278.5 181 70.2
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 6.4e-73 277.7 181 69.6
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.6e-71 273.1 183 68.3
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 7.8e-71 270.8 183 67.8
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 2.3e-70 269.2 183 67.2
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 3.8e-65 251.9 184 57.6
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 3.8e-57 225.3 181 55.2
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 5.4e-56 221.5 182 53.8
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 3.9e-54 215.3 172 61.6
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 8.7e-54 214.2 186 52.2
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 2.5e-53 212.6 185 51.4
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 1.8e-51 206.5 175 52.6
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 5.1e-46 188.3 151 56.3
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 2.9e-41 172.6 178 48.3
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 3.1e-35 152.5 89 79.8
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 1.0e-30 137.5 172 42.4
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 3.4e-26 122.5 158 38.0
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 2.5e-24 116.3 87 62.1
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 6.3e-20 101.7 60 81.7
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 2.7e-07 59.7 88 35.2


User provided reference genes

Program Settings