Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 5.7e-245 850.5 439 100.0
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 4.1e-227 791.2 439 93.4
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 5.4e-227 790.8 439 92.7
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 6.6e-225 783.9 440 91.8
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 3.3e-224 781.6 442 91.9
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.1e-219 766.5 440 90.5
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 9.2e-219 763.5 440 90.0
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 9.2e-219 763.5 440 90.0
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.0e-217 760.0 441 90.0
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 2.6e-213 745.3 439 89.3
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 3.4e-213 745.0 441 88.4
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 2.9e-212 741.9 440 88.0
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 2.9e-212 741.9 441 88.2
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 3.7e-212 741.5 443 88.3
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 9.2e-211 736.9 440 87.3
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.1e-208 729.9 442 86.2
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-208 729.2 440 86.4
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.9e-208 729.2 440 86.4
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-205 719.9 441 85.9
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 1.2e-205 719.9 441 85.9
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.3e-196 689.9 443 81.9
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 2.2e-196 689.1 518 72.6
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.9e-196 688.7 440 80.9
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.4e-195 686.4 441 80.5
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.2e-195 685.3 438 81.5
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 2.7e-194 682.2 438 81.1
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.5e-194 681.8 443 80.1
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.5e-194 681.8 438 81.3
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 7.8e-194 680.6 442 80.3
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.0e-193 680.2 442 80.5
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 2.3e-193 679.1 441 80.7
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.3e-193 679.1 444 80.2
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 3.0e-193 678.7 440 80.5
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.1e-192 676.8 441 80.5
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.9e-192 676.0 441 79.6
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 2.5e-192 675.6 440 81.6
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 2.5e-192 675.6 439 79.7
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 5.6e-192 674.5 447 78.7
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.1e-191 672.5 445 79.1
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.8e-191 672.2 440 80.0
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 4.7e-191 671.4 442 79.6
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 6.2e-191 671.0 442 79.4
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 8.1e-191 670.6 436 79.1
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 8.1e-191 670.6 441 78.9
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.1e-190 670.2 439 80.2
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.1e-190 670.2 442 79.2
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.4e-190 669.8 442 79.6
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 6.8e-190 667.5 444 79.3
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 8.9e-190 667.2 439 80.0
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 8.9e-190 667.2 439 79.0
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.2e-189 666.8 441 78.5
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 2.0e-189 666.0 442 79.2
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.4e-189 665.2 441 78.7
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 4.4e-189 664.8 442 79.0
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 5.8e-189 664.5 442 78.5
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 7.6e-189 664.1 440 79.8
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 7.6e-189 664.1 435 79.3
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 7.6e-189 664.1 443 78.6
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 9.9e-189 663.7 440 78.4
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.7e-188 662.9 442 78.1
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 2.2e-188 662.5 401 83.0
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 2.9e-188 662.1 441 77.8
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 3.8e-188 661.8 446 79.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 6.4e-188 661.0 436 79.4
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.4e-187 659.8 440 79.1
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.9e-187 659.4 440 79.1
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.4e-187 659.1 439 78.4
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 3.2e-187 658.7 439 77.2
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 3.2e-187 658.7 439 77.2
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 5.4e-187 657.9 442 78.5
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 7.1e-187 657.5 441 79.1
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.2e-186 656.8 445 76.6
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.6e-186 656.4 441 78.5
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.6e-186 656.4 434 78.3
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.6e-186 656.4 436 78.2
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 2.7e-186 655.6 441 78.0
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.0e-185 653.7 443 76.7
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.3e-185 653.3 395 83.3
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.7e-185 652.9 437 78.9
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 2.3e-185 652.5 443 78.8
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 3.0e-185 652.1 395 83.0
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 3.0e-185 652.1 439 79.0
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 3.0e-185 652.1 434 78.1
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.9e-185 651.7 425 79.3
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 6.6e-185 651.0 443 77.4
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 8.7e-185 650.6 440 77.7
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.1e-184 650.2 444 76.1
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.6e-183 646.4 436 77.1
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.1e-183 646.0 436 77.1
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 2.8e-183 645.6 440 76.1
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.6e-183 645.2 395 82.5
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 6.2e-183 644.4 442 76.2
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.1e-182 643.7 438 76.3
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.4e-182 643.3 444 77.5
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 1.4e-182 643.3 438 77.9
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.4e-182 643.3 437 76.9
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.8e-182 642.9 396 84.3
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.2e-181 640.2 407 79.1
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 2.0e-181 639.4 401 80.5
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 2.6e-181 639.0 438 76.3
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 4.4e-181 638.3 444 75.2
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.3e-180 636.7 437 75.5
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.7e-180 636.3 440 75.7
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 6.4e-180 634.4 413 80.1
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 6.4e-180 634.4 444 75.0
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 3.0e-177 625.5 442 76.0
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.3e-175 620.2 383 81.2
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 8.1e-175 617.5 390 84.6
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 1.4e-174 616.7 417 75.8
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 1.8e-174 616.3 397 80.9
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.2e-173 613.6 423 75.9
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 2.6e-173 612.5 420 75.7
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.1e-171 607.1 446 73.1
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.9e-171 606.3 406 75.6
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.9e-171 606.3 479 68.1
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 3.9e-169 598.6 438 73.1
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 3.9e-169 598.6 396 75.8
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.5e-168 595.9 387 80.1
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 5.6e-168 594.7 433 72.5
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 7.4e-168 594.3 443 72.7
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.1e-162 576.2 380 79.2
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 9.0e-158 560.8 446 69.3
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.2e-157 560.5 365 80.5
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 5.5e-147 525.0 371 68.5
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 9.4e-147 524.2 359 76.6
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.2e-146 523.9 367 71.1
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 3.6e-146 522.3 404 65.8
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 9.1e-142 507.7 363 68.6
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.2e-141 507.3 391 66.0
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.0e-141 506.5 429 63.2
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 2.2e-140 503.1 303 85.1
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 6.5e-140 501.5 401 65.3
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.9e-139 500.0 362 67.7
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.2e-139 498.8 399 64.9
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.5e-139 498.4 399 64.9
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.4e-137 493.8 380 64.5
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 2.6e-136 489.6 361 70.1
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 2.6e-136 489.6 378 64.0
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.5e-133 479.2 367 66.5
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.5e-131 473.0 374 61.5
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.1e-126 457.6 317 75.7
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 4.1e-126 455.7 360 62.8
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 7.7e-125 451.4 393 57.5
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 7.2e-115 418.3 365 61.1
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 6.8e-97 358.6 369 54.5
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 5.2e-89 332.4 302 58.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 4.4e-80 302.8 216 70.8
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 5.2e-73 279.3 193 79.8
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.8e-65 254.2 320 44.7
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 7.1e-62 242.3 145 88.3
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 4.8e-58 229.6 200 60.5
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 8.1e-58 228.8 125 87.2
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 4.6e-53 213.0 154 69.5
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.1e-37 161.0 162 53.7
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 3.5e-37 160.2 119 68.9
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 8.7e-36 155.6 111 76.6
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 6.9e-33 146.0 81 90.1
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 2.7e-29 134.0 100 63.0
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 9.7e-27 125.6 80 76.2
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.4e-25 121.7 80 71.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 5.7e-19 99.8 106 49.1
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.7e-18 98.2 60 75.0
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.4e-12 78.6 94 47.9
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 4.5e-08 63.5 35 85.7


User provided reference genes

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