Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 7.1e-57 223.8 119 100.0
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 1.9e-33 146.0 107 73.8
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 4.3e-30 134.8 113 67.3
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.3e-29 133.3 107 69.2
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 2.6e-27 125.6 110 64.5
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 4.5e-27 124.8 107 67.3
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 2.2e-26 122.5 110 63.6
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 2.9e-26 122.1 110 63.6
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.9e-26 122.1 113 63.7
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 3.8e-26 121.7 110 62.7
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 3.9e-15 85.1 136 41.9
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 6.7e-15 84.3 129 45.0
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 4.3e-14 81.6 117 51.3
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 9.7e-14 80.5 130 45.4
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 2.2e-13 79.3 125 43.2
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 3.7e-13 78.6 127 41.7
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 4.8e-13 78.2 140 42.1
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 4.8e-13 78.2 133 41.4
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 1.4e-12 76.6 124 44.4
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 5.3e-12 74.7 125 43.2
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 9.1e-12 73.9 129 41.1
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.5e-11 73.2 135 40.7
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 2.0e-11 72.8 142 39.4
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 4.5e-11 71.6 140 38.6
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 5.9e-11 71.2 129 42.6
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 5.9e-11 71.2 134 41.0
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 7.7e-11 70.9 123 41.5
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 7.7e-11 70.9 128 43.0
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.0e-10 70.5 153 36.6
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.3e-10 70.1 133 39.8
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 2.2e-10 69.3 133 39.1
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 6.5e-10 67.8 137 36.5
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 8.5e-10 67.4 132 37.9
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.4e-09 66.6 138 39.1
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 1.4e-09 66.6 138 34.1
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 1.9e-09 66.2 112 43.8
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 2.5e-09 65.9 137 38.7
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 2.5e-09 65.9 133 39.8
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 3.2e-09 65.5 116 44.0
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 3.2e-09 65.5 150 37.3
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 5.5e-09 64.7 130 36.2
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 5.5e-09 64.7 129 35.7
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 1.6e-08 63.2 134 38.1
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 3.6e-08 62.0 107 43.9
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 3.6e-08 62.0 138 36.2
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 4.7e-08 61.6 127 37.8
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 4.7e-08 61.6 147 35.4
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 6.1e-08 61.2 127 38.6
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.0e-07 60.5 121 38.0
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.4e-07 60.1 151 35.1
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.4e-07 60.1 120 36.7
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 2.3e-07 59.3 128 35.2
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 3.0e-07 58.9 123 38.2
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 3.0e-07 58.9 118 37.3
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 3.0e-07 58.9 137 35.8
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 3.9e-07 58.5 118 39.8
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.1e-07 58.2 133 39.1
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 5.1e-07 58.2 128 36.7
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 8.8e-07 57.4 135 37.8
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 8.8e-07 57.4 110 39.1
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 8.8e-07 57.4 137 36.5
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 8.8e-07 57.4 129 38.8
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.1e-06 57.0 140 34.3
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 1.5e-06 56.6 124 34.7
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.5e-06 56.6 135 34.8
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 2.0e-06 56.2 112 39.3
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.6e-06 55.8 131 35.1
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.6e-06 55.8 108 38.9
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 3.3e-06 55.5 143 34.3
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 3.3e-06 55.5 142 33.1
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 5.7e-06 54.7 131 35.1
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 5.7e-06 54.7 111 39.6
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.4e-06 54.3 123 36.6
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 7.4e-06 54.3 135 35.6
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 7.4e-06 54.3 121 37.2
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 9.7e-06 53.9 123 34.1
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 9.7e-06 53.9 119 38.7
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 9.7e-06 53.9 121 37.2


User provided reference genes

Program Settings