Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR199240 Cardamine hirsuta HOM05D005517 ORTHO05D006760 1.3e-32 142.5 76 100.0
A02p02340 Brassica napus HOM05D005517 ORTHO05D006760 4.4e-28 127.5 76 89.5
BraA02t05205Z Brassica rapa HOM05D005517 ORTHO05D006760 4.4e-28 127.5 76 89.5
Carub.0006s1230 Capsella rubella HOM05D005517 ORTHO05D006760 2.2e-27 125.2 77 90.9
BcaC03g13514 Brassica carinata HOM05D005517 ORTHO05D006760 3.7e-27 124.4 76 88.2
BcaC03g13515 Brassica carinata HOM05D005517 ORTHO05D006760 3.7e-27 124.4 76 88.2
Aa31LG11G14910 Aethionema arabicum HOM05D005517 ORTHO05D006760 4.9e-27 124.0 76 84.2
AT5G14105 Arabidopsis thaliana HOM05D005517 ORTHO05D006760 8.3e-27 123.2 77 90.9
BcaB01g06344 Brassica carinata HOM05D005517 ORTHO05D006760 8.3e-27 123.2 76 86.8
BcaC04g19059 Brassica carinata HOM05D005517 ORTHO05D006760 1.1e-26 122.9 76 85.5
C09p63000 Brassica napus HOM05D005517 ORTHO05D006760 1.1e-26 122.9 76 85.5
BolC9t59138H Brassica oleracea HOM05D005517 ORTHO05D006760 1.1e-26 122.9 76 85.5
BcaB08g36959 Brassica carinata HOM05D005517 ORTHO05D006760 1.9e-26 122.1 76 85.5
A10p24320 Brassica napus HOM05D005517 ORTHO05D006760 2.4e-26 121.7 76 84.2
BraA10t44498Z Brassica rapa HOM05D005517 ORTHO05D006760 2.4e-26 121.7 76 84.2
BcaNung06018 Brassica carinata HOM05D005517 ORTHO05D006760 1.2e-25 119.4 76 85.5
Ciclev10017370m.g Citrus clementina HOM05D005517 ORTHO05D006760 1.6e-25 119.0 74 82.4
THA.LOC104803813 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 1.6e-25 119.0 76 81.6
C02p06560 Brassica napus HOM05D005517 ORTHO05D006760 2.0e-25 118.6 76 86.8
BcaC03g13513 Brassica carinata HOM05D005517 ORTHO05D006760 1.0e-24 116.3 74 82.4
Duzib187G1036 Durio zibethinus HOM05D005517 ORTHO05D006760 5.0e-24 114.0 76 81.6
Atru.chr6.2589 Acer truncatum HOM05D005517 ORTHO05D006760 8.6e-24 113.2 74 78.4
Cpa.g.sc70.124 Carica papaya HOM05D005517 ORTHO05D006760 2.5e-23 111.7 73 78.1
Duzib264G0094 Durio zibethinus HOM05D005517 ORTHO05D006760 2.5e-23 111.7 76 80.3
Thecc.04G039500 Theobroma cacao HOM05D005517 ORTHO05D006760 2.5e-23 111.7 76 80.3
Glyma.19G093900 Glycine max HOM05D005517 ORTHO05D006760 7.3e-23 110.2 73 76.7
Sabra17G0058600 Salix brachista HOM05D005517 ORTHO05D006760 7.3e-23 110.2 73 75.3
COL.COLO4_13282 Corchorus olitorius HOM05D005517 ORTHO05D006760 9.5e-23 109.8 76 78.9
Potri.001G328100 Populus trichocarpa HOM05D005517 ORTHO05D006760 9.5e-23 109.8 73 78.1
Gohir.D04G075800 Gossypium hirsutum HOM05D005517 ORTHO05D006760 1.2e-22 109.4 76 77.6
Manes.15G162502 Manihot esculenta HOM05D005517 ORTHO05D006760 1.2e-22 109.4 73 76.7
Potri.017G066388 Populus trichocarpa HOM05D005517 ORTHO05D006760 1.2e-22 109.4 73 75.3
Aa31LG5G11080 Aethionema arabicum HOM05D005517 ORTHO05D006760 3.6e-22 107.8 78 76.9
GSVIVG01028670001 Vitis vinifera HOM05D005517 ORTHO05D006760 4.7e-22 107.5 73 72.6
CiPaw.03G057500 Carya illinoinensis HOM05D005517 ORTHO05D006760 6.2e-22 107.1 73 76.7
Glyma.16G054600 Glycine max HOM05D005517 ORTHO05D006760 6.2e-22 107.1 73 75.3
TAR371G1004 Trochodendron aralioides HOM05D005517 ORTHO05D006760 6.2e-22 107.1 74 74.3
Duzib147G1371 Durio zibethinus HOM05D005517 ORTHO05D006760 8.1e-22 106.7 76 77.6
Gohir.A07G229900 Gossypium hirsutum HOM05D005517 ORTHO05D006760 8.1e-22 106.7 68 82.4
Gohir.D07G237100 Gossypium hirsutum HOM05D005517 ORTHO05D006760 8.1e-22 106.7 68 82.4
Gorai.001G273000 Gossypium raimondii HOM05D005517 ORTHO05D006760 8.1e-22 106.7 68 82.4
TWI74G0054 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 1.1e-21 106.3 73 75.3
TWI74G0227 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 1.1e-21 106.3 73 75.3
TAR629G2363 Trochodendron aralioides HOM05D005517 ORTHO05D006760 1.8e-21 105.5 73 75.3
Nn3g16415 Nelumbo nucifera HOM05D005517 ORTHO05D006760 3.1e-21 104.8 74 73.0
Phvul.001G091300 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 4.0e-21 104.4 73 71.2
Migut.F00052 Erythranthe guttata HOM05D005517 ORTHO05D006760 6.8e-21 103.6 73 75.3
Lalb_Chr05g0214841 Lupinus albus HOM05D005517 ORTHO05D006760 1.2e-20 102.8 73 74.0
Thhalv10021865m.g Eutrema salsugineum HOM05D005517 ORTHO05D006760 5.8e-20 100.5 79 74.7
Lj1g0000511 Lotus japonicus HOM05D005517 ORTHO05D006760 5.8e-20 100.5 73 72.6
Lalb_Chr16g0380111 Lupinus albus HOM05D005517 ORTHO05D006760 5.8e-20 100.5 73 72.6
SEGI_12962 Sequoiadendron giganteum HOM05D005517 ORTHO05D006760 5.8e-20 100.5 73 67.1
RcHm_v2.0_Chr1g0371371 Rosa chinensis HOM05D005517 ORTHO05D006760 1.3e-19 99.4 73 74.0
RcHm_v2.0_Chr7g0186891 Rosa chinensis HOM05D005517 ORTHO05D006760 1.3e-19 99.4 73 74.0
CANSAT64G1159 Cannabis sativa HOM05D005517 ORTHO05D006760 1.7e-19 99.0 72 72.2
Cc03_g13370 Coffea canephora HOM05D005517 ORTHO05D006760 2.2e-19 98.6 74 67.6
MBI06_g06692_MAGBIO Magnolia biondii HOM05D005517 ORTHO05D006760 2.2e-19 98.6 74 70.3
FvH4_5g10930 Fragaria vesca HOM05D005517 ORTHO05D006760 2.9e-19 98.2 73 74.0
FAN08G0577 Fragaria x ananassa HOM05D005517 ORTHO05D006760 2.9e-19 98.2 73 74.0
FAN13G3313 Fragaria x ananassa HOM05D005517 ORTHO05D006760 2.9e-19 98.2 73 74.0
FAN18G2496 Fragaria x ananassa HOM05D005517 ORTHO05D006760 2.9e-19 98.2 73 74.0
arahy.Tifrunner.gnm1.ann1.3828X0 Arachis hypogaea HOM05D005517 ORTHO05D006760 6.4e-19 97.1 73 69.9
Cc10_g16370 Coffea canephora HOM05D005517 ORTHO05D006760 8.3e-19 96.7 74 68.9
CiPaw.04G038900 Carya illinoinensis HOM05D005517 ORTHO05D006760 1.1e-18 96.3 69 73.9
Ca_26962_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 1.1e-18 96.3 73 71.2
Eucgr.H04420 Eucalyptus grandis HOM05D005517 ORTHO05D006760 1.1e-18 96.3 73 72.6
Aqoxy1G01489 Aquilegia oxysepala HOM05D005517 ORTHO05D006760 1.4e-18 95.9 73 64.4
Oeu063019.1 Olea europaea HOM05D005517 ORTHO05D006760 1.4e-18 95.9 73 69.9
HPP92_000894 Vanilla planifolia HOM05D005517 ORTHO05D006760 1.4e-18 95.9 74 63.5
CDE08G1355 Ceratophyllum demersum HOM05D005517 ORTHO05D006760 1.9e-18 95.5 73 63.0
AUR62006995 Chenopodium quinoa HOM05D005517 ORTHO05D006760 1.9e-18 95.5 72 66.7
QL10p050767 Quercus lobata HOM05D005517 ORTHO05D006760 1.9e-18 95.5 65 75.4
ClCG05G013610 Citrullus lanatus HOM05D005517 ORTHO05D006760 2.4e-18 95.1 73 71.2
TWI34G0084 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 2.4e-18 95.1 73 72.6
TWI34G1158 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 2.4e-18 95.1 73 72.6
AUR62000640 Chenopodium quinoa HOM05D005517 ORTHO05D006760 3.2e-18 94.7 69 68.1
Dinv25651 Davidia involucrata HOM05D005517 ORTHO05D006760 3.2e-18 94.7 73 67.1
TWI60G0382 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 3.2e-18 94.7 73 72.6
MD14G1126500 Malus domestica HOM05D005517 ORTHO05D006760 4.1e-18 94.4 75 65.3
EL10Ac7g18130 Beta vulgaris HOM05D005517 ORTHO05D006760 5.4e-18 94.0 74 66.2
Hma1.2p1_1057F.1_g252720 Hydrangea macrophylla HOM05D005517 ORTHO05D006760 5.4e-18 94.0 74 64.9
MD06G1118400 Malus domestica HOM05D005517 ORTHO05D006760 5.4e-18 94.0 74 67.6
Os05g0517800 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 5.4e-18 94.0 75 64.0
CSS0012820 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 7.1e-18 93.6 73 71.2
Dinv33325 Davidia involucrata HOM05D005517 ORTHO05D006760 7.1e-18 93.6 73 68.5
QL02p071008 Quercus lobata HOM05D005517 ORTHO05D006760 7.1e-18 93.6 64 75.0
THA.LOC104814182 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 9.2e-18 93.2 127 47.2
Zm00001eb293020 Zea mays HOM05D005517 ORTHO05D006760 9.2e-18 93.2 74 67.6
EL10Ac4g09777 Beta vulgaris HOM05D005517 ORTHO05D006760 1.2e-17 92.8 72 69.4
Hund07167 Selenicereus undatus HOM05D005517 ORTHO05D006760 1.2e-17 92.8 77 62.3
CSS0038475 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 1.6e-17 92.4 72 65.3
PSO210G3561 Papaver somniferum HOM05D005517 ORTHO05D006760 1.6e-17 92.4 73 64.4
PSO302G0245 Papaver somniferum HOM05D005517 ORTHO05D006760 2.1e-17 92.0 73 65.8
CAN.G473.115 Capsicum annuum HOM05D005517 ORTHO05D006760 2.7e-17 91.7 73 65.8
Sopen04g004730 Solanum pennellii HOM05D005517 ORTHO05D006760 2.7e-17 91.7 73 65.8
PGSC0003DMG400032535 Solanum tuberosum HOM05D005517 ORTHO05D006760 2.7e-17 91.7 73 65.8
Prupe.5G129500 Prunus persica HOM05D005517 ORTHO05D006760 3.5e-17 91.3 73 69.9
PGR142G3118 Punica granatum HOM05D005517 ORTHO05D006760 6.0e-17 90.5 75 69.3
HanXRQChr02g0035131 Helianthus annuus HOM05D005517 ORTHO05D006760 7.8e-17 90.1 73 64.4
Medtr7g028755 Medicago truncatula HOM05D005517 ORTHO05D006760 7.8e-17 90.1 73 67.1
vmacro22457 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 7.8e-17 90.1 73 64.4
Rhsim08G0041900 Rhododendron simsii HOM05D005517 ORTHO05D006760 1.0e-16 89.7 72 66.7
CsaV3_3G026940 Cucumis sativus L. HOM05D005517 ORTHO05D006760 1.3e-16 89.4 73 67.1
Nitab4.5_0007375g0080 Nicotiana tabacum HOM05D005517 ORTHO05D006760 1.3e-16 89.4 73 64.4
Ca_14034_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 1.7e-16 89.0 76 61.8
Lsat_1_v5_gn_1_29421 Lactuca sativa HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 64.4
Sopen02g038880 Solanum pennellii HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 64.4
PGSC0003DMG402020250 Solanum tuberosum HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 64.4
Hund05668 Selenicereus undatus HOM05D005517 ORTHO05D006760 2.3e-16 88.6 74 68.9
Solyc04g009570.3 Solanum lycopersicum HOM05D005517 ORTHO05D006760 2.3e-16 88.6 73 64.4
Peaxi162Scf00420g00633 Petunia axillaris HOM05D005517 ORTHO05D006760 3.9e-16 87.8 73 61.6
MELO3C014894.2 Cucumis melo HOM05D005517 ORTHO05D006760 5.1e-16 87.4 73 67.1
ECA232G0857 Erigeron canadensis HOM05D005517 ORTHO05D006760 5.1e-16 87.4 73 63.0
Psat5g229880 Pisum sativum HOM05D005517 ORTHO05D006760 8.6e-16 86.7 73 63.0
Rhsim10G0005200 Rhododendron simsii HOM05D005517 ORTHO05D006760 8.6e-16 86.7 73 61.6
Medtr3g007670 Medicago truncatula HOM05D005517 ORTHO05D006760 1.1e-15 86.3 74 64.9
Sabra16G0209900 Salix brachista HOM05D005517 ORTHO05D006760 1.1e-15 86.3 56 78.6
Lsat_1_v5_gn_4_78980 Lactuca sativa HOM05D005517 ORTHO05D006760 1.9e-15 85.5 72 62.5
HanXRQChr16g0497941 Helianthus annuus HOM05D005517 ORTHO05D006760 3.3e-15 84.7 73 61.6
Psat6g022360 Pisum sativum HOM05D005517 ORTHO05D006760 4.3e-15 84.3 73 63.0
Phvul.009G125500 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 7.3e-15 83.6 52 78.8
TPR.G30072 Trifolium pratense HOM05D005517 ORTHO05D006760 1.6e-14 82.4 69 58.0
arahy.Tifrunner.gnm1.ann1.9JMW1H Arachis hypogaea HOM05D005517 ORTHO05D006760 4.7e-14 80.9 50 80.0
Haze_14891 Corylus avellana HOM05D005517 ORTHO05D006760 4.7e-14 80.9 51 82.4
AagrBONN_evm.TU.Sc2ySwM_228.2988 Anthoceros agrestis HOM05D005517 ORTHO05D006760 2.6e-12 75.1 74 59.5
Mapoly0055s0070 Marchantia polymorpha HOM05D005517 ORTHO05D006760 7.6e-12 73.6 76 50.0
Os03g0733000 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 2.2e-11 72.0 74 52.7
Peaxi162Scf00064g01122 Petunia axillaris HOM05D005517 ORTHO05D006760 2.2e-11 72.0 68 51.5
Cc02_g28320 Coffea canephora HOM05D005517 ORTHO05D006760 3.8e-11 71.2 59 61.0
TPR.G36037 Trifolium pratense HOM05D005517 ORTHO05D006760 8.4e-11 70.1 50 68.0
Pp3c14_7680 Physcomitrium patens HOM05D005517 ORTHO05D006760 5.4e-10 67.4 60 55.0
Pp3c1_33450 Physcomitrium patens HOM05D005517 ORTHO05D006760 7.1e-10 67.0 74 47.3
vmacro05969 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 7.1e-10 67.0 51 64.7
Prupe.2G009500 Prunus persica HOM05D005517 ORTHO05D006760 2.1e-09 65.5 73 57.5
Sed0001513 Sechium edule HOM05D005517 ORTHO05D006760 5.6e-07 57.4 34 85.3
MCO07G725 Micromonas commoda HOM05D005517 ORTHO05D006760 2.1e-06 55.5 70 45.7


User provided reference genes

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