Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 3.5e-80 301.6 156 100.0
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 1.1e-49 200.3 131 84.0
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 4.2e-49 198.4 131 85.5
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 1.6e-48 196.4 131 84.7
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 3.5e-48 195.3 131 85.5
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 3.9e-47 191.8 131 81.7
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.3e-45 186.8 129 81.4
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 1.3e-45 186.8 129 81.4
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.1e-44 183.7 129 79.8
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 3.2e-41 172.2 130 76.9
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 5.5e-41 171.4 130 76.9
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 3.0e-39 165.6 132 74.2
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 3.0e-39 165.6 132 74.2
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 1.9e-38 162.9 128 73.4
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 1.8e-31 139.8 130 66.2
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.5e-30 136.7 134 64.9
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 9.7e-30 134.0 124 66.9
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.4e-28 130.2 136 59.6
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.4e-28 130.2 136 59.6
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 8.8e-23 110.9 152 52.0
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 2.7e-16 89.4 126 49.2
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 6.7e-15 84.7 137 49.6
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 6.7e-15 84.7 126 47.6
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 6.7e-15 84.7 136 47.8
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 1.5e-14 83.6 140 45.0
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 2.0e-14 83.2 140 45.0
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 4.4e-14 82.0 128 48.4
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 7.4e-14 81.3 150 42.0
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 9.7e-14 80.9 140 44.3
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 2.2e-13 79.7 133 46.6
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 2.8e-13 79.3 128 47.7
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 1.1e-12 77.4 133 42.9
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 3.1e-12 75.9 134 42.5
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 5.3e-12 75.1 140 42.9
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 9.1e-12 74.3 145 40.7
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.2e-11 73.9 145 41.4
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.2e-11 73.9 145 41.4
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 1.2e-11 73.9 129 41.1
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.3e-10 70.5 57 71.9
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 1.3e-10 70.5 136 44.1
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 2.2e-10 69.7 85 50.6
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 5.0e-10 68.6 133 44.4
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 5.0e-10 68.6 147 39.5
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 6.5e-10 68.2 96 44.8
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 6.5e-10 68.2 138 39.9
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 8.5e-10 67.8 138 41.3
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 8.5e-10 67.8 95 49.5
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 8.5e-10 67.8 138 42.0
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 1.1e-09 67.4 141 39.7
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 1.1e-09 67.4 112 46.4
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.5e-09 67.0 59 67.8
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 1.9e-09 66.6 132 43.9
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 2.5e-09 66.2 145 40.0
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 3.2e-09 65.9 138 40.6
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 3.2e-09 65.9 138 43.5
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 3.2e-09 65.9 137 40.1
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 4.2e-09 65.5 136 45.6
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 4.2e-09 65.5 134 42.5
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 5.5e-09 65.1 101 46.5
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 5.5e-09 65.1 57 70.2
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 7.2e-09 64.7 101 46.5
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 7.2e-09 64.7 120 47.5
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 9.4e-09 64.3 109 42.2
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 9.4e-09 64.3 101 46.5
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 9.4e-09 64.3 138 42.8
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 1.6e-08 63.5 132 39.4
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.6e-08 63.5 139 39.6
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.6e-08 63.5 126 44.4
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 1.6e-08 63.5 121 42.1
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.1e-08 63.2 78 48.7
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 2.1e-08 63.2 133 42.1
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 2.7e-08 62.8 59 61.0
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.7e-08 62.8 97 40.2
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 2.7e-08 62.8 127 38.6
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 3.6e-08 62.4 62 54.8
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 3.6e-08 62.4 136 38.2
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 4.7e-08 62.0 132 41.7
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 4.7e-08 62.0 132 43.2
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 6.1e-08 61.6 140 37.1
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 8.0e-08 61.2 142 40.1
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 8.0e-08 61.2 142 36.6
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 1.0e-07 60.8 148 35.8
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.4e-07 60.5 129 38.8
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.8e-07 60.1 94 44.7
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 1.8e-07 60.1 59 61.0
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 3.0e-07 59.3 132 39.4
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 3.0e-07 59.3 134 39.6
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 5.2e-07 58.5 86 53.5
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 5.2e-07 58.5 134 37.3
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.2e-07 58.5 114 44.7
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 5.2e-07 58.5 146 37.0
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 8.8e-07 57.8 79 46.8
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.2e-06 57.4 114 43.0
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 4.4e-06 55.5 82 47.6
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 7.5e-06 54.7 86 51.2
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 7.5e-06 54.7 144 36.1
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 7.5e-06 54.7 135 33.3
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 9.7e-06 54.3 87 48.3
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 9.7e-06 54.3 54 61.1


User provided reference genes

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