Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.4e-63 246.1 123 100.0
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 6.9e-47 190.7 123 80.5
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 5.4e-44 181.0 124 76.6
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 9.3e-44 180.3 123 76.4
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.9e-42 174.9 123 73.2
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 8.1e-40 167.2 130 71.5
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 3.1e-39 165.2 129 69.0
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 3.1e-39 165.2 129 69.0
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 3.4e-38 161.8 130 70.0
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 7.6e-38 160.6 125 68.0
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 4.9e-37 157.9 123 69.9
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 1.8e-31 139.4 116 68.1
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.0e-31 138.3 124 58.9
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 9.0e-31 137.1 126 57.9
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 3.4e-30 135.2 121 57.0
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.7e-29 132.9 121 57.9
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 2.9e-29 132.1 121 57.9
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 2.9e-29 132.1 121 57.9
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 8.4e-29 130.6 122 56.6
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 8.4e-29 130.6 127 56.7
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.1e-28 130.2 119 55.5
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.1e-28 130.2 123 56.1
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.5e-28 129.0 122 55.7
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 9.3e-28 127.1 126 54.8
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.2e-27 126.7 124 57.3
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.2e-27 126.7 124 54.0
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.2e-27 126.7 124 54.0
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 2.7e-27 125.6 124 54.0
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 3.5e-27 125.2 124 53.2
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 4.6e-27 124.8 130 56.2
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 7.9e-27 124.0 124 54.8
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 6.3e-24 114.4 128 50.0
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.8e-23 112.8 130 50.0
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.3e-23 111.3 130 48.5
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 9.0e-23 110.5 124 50.0
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.5e-22 109.8 122 48.4
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.3e-21 106.7 95 50.5
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.3e-21 106.7 120 46.7
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.3e-21 106.7 130 46.9
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.7e-21 106.3 90 55.6
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.2e-21 105.9 126 45.2
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.2e-21 105.9 126 45.2
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.2e-21 105.9 126 45.2
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.2e-21 105.9 117 46.2
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 2.9e-21 105.5 119 45.4
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 3.8e-21 105.1 116 46.6
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 8.5e-21 104.0 133 46.6
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 8.5e-21 104.0 122 46.7
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 1.1e-20 103.6 128 43.8
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 2.5e-20 102.4 126 43.7
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.5e-20 102.4 119 46.2
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 4.2e-20 101.7 120 47.5
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 5.5e-20 101.3 89 56.2
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 9.3e-20 100.5 118 46.6
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 6.1e-19 97.8 89 55.1
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.8e-18 96.3 102 48.0
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 2.3e-18 95.9 131 46.6
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.3e-18 95.9 121 44.6
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.0e-18 95.5 120 44.2
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.7e-18 94.4 121 43.0
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 8.8e-18 94.0 125 44.8
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.1e-17 93.6 116 44.8
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.1e-17 93.6 87 54.0
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.1e-17 93.6 122 41.8
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-17 93.6 127 43.3
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.5e-17 93.2 86 50.0
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.5e-17 93.2 127 41.7
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.9e-17 92.8 86 50.0
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.9e-17 92.8 86 50.0
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 1.9e-17 92.8 88 52.3
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.5e-17 92.4 129 45.7
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 2.5e-17 92.4 122 41.8
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.5e-17 92.4 122 43.4
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.5e-17 92.4 126 44.4
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.5e-17 92.4 116 46.6
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 3.3e-17 92.0 86 53.5
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 3.3e-17 92.0 123 42.3
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.3e-17 91.7 130 44.6
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 4.3e-17 91.7 116 44.0
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 5.7e-17 91.3 87 49.4
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 5.7e-17 91.3 86 50.0
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 5.7e-17 91.3 115 45.2
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 9.7e-17 90.5 125 40.8
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.7e-16 89.7 127 44.9
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.7e-16 89.7 116 42.2
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 2.8e-16 89.0 124 42.7
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 3.7e-16 88.6 122 43.4
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 3.7e-16 88.6 120 41.7
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.8e-16 88.2 120 44.2
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-16 88.2 91 50.5
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-16 88.2 91 50.5
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-16 88.2 91 50.5
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 4.8e-16 88.2 91 50.5
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 4.8e-16 88.2 118 40.7
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.8e-16 88.2 121 44.6
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 6.3e-16 87.8 117 41.0
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 6.3e-16 87.8 85 54.1
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 8.2e-16 87.4 116 40.5
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 8.2e-16 87.4 116 40.5
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 8.2e-16 87.4 120 40.8
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.1e-15 87.0 93 49.5
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.4e-15 86.7 121 39.7
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.4e-15 86.7 127 43.3
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.8e-15 86.3 86 51.2
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.8e-15 86.3 86 51.2
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.4e-15 85.9 89 53.9
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.4e-15 85.9 122 39.3
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 3.1e-15 85.5 123 40.7
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.1e-15 85.1 115 43.5
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 4.1e-15 85.1 92 48.9
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 4.1e-15 85.1 90 51.1
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 4.1e-15 85.1 116 43.1
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 4.1e-15 85.1 124 40.3
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 5.3e-15 84.7 123 41.5
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 5.3e-15 84.7 110 45.5
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 5.3e-15 84.7 86 52.3
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 6.9e-15 84.3 83 49.4
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 6.9e-15 84.3 123 41.5
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 9.1e-15 84.0 122 40.2
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 9.1e-15 84.0 102 48.0
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.2e-14 83.6 121 39.7
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.5e-14 83.2 124 41.1
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.5e-14 83.2 95 47.4
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 2.0e-14 82.8 87 50.6
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 2.0e-14 82.8 87 50.6
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.6e-14 82.4 121 43.0
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.6e-14 82.4 93 45.2
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 2.6e-14 82.4 88 45.5
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 3.4e-14 82.0 133 39.8
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.5e-14 81.6 84 48.8
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 4.5e-14 81.6 91 49.5
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.5e-14 81.6 116 39.7
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 7.7e-14 80.9 89 48.3
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 7.7e-14 80.9 119 39.5
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.2e-13 79.3 116 40.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.2e-13 79.3 96 43.8
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.2e-13 79.3 85 50.6
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 2.9e-13 79.0 116 39.7
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 2.9e-13 79.0 128 39.8
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.1e-12 77.0 82 47.6
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.1e-12 77.0 81 48.1
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 1.4e-12 76.6 83 51.8
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.9e-12 76.3 127 36.2
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.9e-12 76.3 89 44.9
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.9e-12 76.3 120 40.8
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.9e-12 76.3 121 38.0
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 2.5e-12 75.9 79 50.6
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 3.2e-12 75.5 104 45.2
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 4.2e-12 75.1 80 51.2
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.2e-12 75.1 101 39.6
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 4.2e-12 75.1 93 45.2
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 7.2e-12 74.3 98 46.9
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.2e-11 73.6 80 52.5
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.2e-11 73.6 82 45.1
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.6e-11 73.2 120 36.7
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.6e-11 73.2 122 40.2
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.7e-11 72.4 83 45.8
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.6e-11 72.0 96 42.7
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 3.6e-11 72.0 121 39.7
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 3.6e-11 72.0 105 42.9
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 7.9e-11 70.9 87 43.7
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.0e-10 70.5 121 39.7
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.4e-10 70.1 126 37.3
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.8e-10 69.7 121 40.5
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 1.8e-10 69.7 79 48.1
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 2.3e-10 69.3 82 45.1
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 2.3e-10 69.3 123 39.0
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.0e-10 68.9 89 41.6
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 3.9e-10 68.6 99 40.4
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 5.1e-10 68.2 67 50.7
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.8e-10 67.4 81 50.6
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 8.8e-10 67.4 83 47.0
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 1.1e-09 67.0 83 45.8
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.5e-09 66.6 91 41.8
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.0e-09 66.2 91 40.7
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.3e-09 65.5 116 39.7
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 5.7e-09 64.7 84 40.5
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.8e-08 62.4 101 33.7
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 6.3e-08 61.2 82 41.5
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.1e-07 60.5 41 58.5
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.8e-07 59.7 84 38.1
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.1e-07 58.9 100 36.0
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.0e-07 57.8 89 37.1
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.2e-06 57.0 81 34.6
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.2e-06 57.0 100 37.0


User provided reference genes

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