Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 1.4e-176 622.9 315 100.0
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 5.7e-130 468.0 263 88.6
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 1.7e-129 466.5 259 91.1
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 9.1e-128 460.7 263 88.2
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 2.7e-127 459.1 264 87.9
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 7.7e-127 457.6 263 87.5
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 2.2e-126 456.1 265 87.2
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 9.4e-125 450.7 259 87.6
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 2.1e-124 449.5 260 86.9
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 4.7e-124 448.4 260 86.5
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 4.7e-124 448.4 260 86.5
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.7e-118 429.9 268 79.9
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.5e-109 399.4 267 73.4
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.0e-107 394.0 259 78.0
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 5.2e-107 391.7 268 72.8
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 2.0e-106 389.8 268 72.8
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 4.4e-106 388.7 266 72.6
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 9.2e-104 380.9 256 72.3
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.6e-103 380.2 267 70.4
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.6e-103 380.2 266 69.9
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 2.0e-103 379.8 268 70.1
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 2.7e-103 379.4 267 69.7
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.7e-103 379.4 266 69.9
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 2.7e-103 379.4 263 69.6
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 3.5e-103 379.0 266 70.7
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.6e-103 378.6 265 69.8
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 4.6e-103 378.6 265 69.8
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 1.0e-102 377.5 266 70.3
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.7e-102 376.7 268 69.0
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 1.5e-101 373.6 267 68.5
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 2.5e-101 372.9 259 71.4
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.5e-101 372.9 265 68.3
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 9.5e-101 370.9 268 68.7
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 1.2e-100 370.5 259 69.9
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 2.1e-100 369.8 258 70.2
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 6.2e-100 368.2 266 68.8
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 1.4e-99 367.1 259 70.3
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 3.1e-99 365.9 267 67.0
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 3.1e-99 365.9 268 67.2
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 5.2e-99 365.2 254 70.9
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 8.9e-99 364.4 265 69.4
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 4.4e-98 362.1 259 69.1
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.2e-97 359.8 255 69.0
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 2.2e-97 359.8 268 66.8
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.4e-96 356.3 264 66.7
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 4.1e-96 355.5 262 66.4
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 4.1e-96 355.5 264 67.0
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 4.1e-96 355.5 264 67.4
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 7.0e-96 354.8 268 66.4
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 9.2e-96 354.4 265 66.8
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 2.7e-95 352.8 256 68.0
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 3.5e-95 352.4 267 64.8
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.3e-94 350.5 260 67.7
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 2.3e-94 349.7 259 65.3
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 2.3e-94 349.7 269 64.7
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.9e-94 349.0 266 65.0
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 8.6e-94 347.8 259 67.6
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 3.3e-93 345.9 256 64.1
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 3.3e-93 345.9 261 65.1
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 1.2e-92 344.0 269 62.8
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 1.2e-92 344.0 259 66.0
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 1.6e-92 343.6 259 67.2
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 2.1e-92 343.2 266 64.3
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 2.1e-92 343.2 267 64.8
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 2.1e-92 343.2 261 64.8
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 4.7e-92 342.0 256 65.6
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 8.1e-92 341.3 258 65.9
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 1.5e-90 337.0 312 58.0
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 2.0e-90 336.7 256 66.0
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.4e-90 335.9 257 65.8
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 7.5e-90 334.7 252 65.5
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 1.3e-89 334.0 258 62.8
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 1.7e-89 333.6 266 63.5
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 2.2e-89 333.2 259 65.3
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 2.2e-89 333.2 266 62.8
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 3.7e-89 332.4 233 69.5
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 8.3e-89 331.3 232 69.4
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 8.3e-89 331.3 261 64.0
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 1.4e-88 330.5 260 62.7
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 1.2e-87 327.4 258 64.0
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 4.3e-85 318.9 258 61.2
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 1.2e-84 317.4 268 60.4
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 3.6e-84 315.8 258 62.0
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 4.7e-84 315.5 260 61.9
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 8.1e-84 314.7 258 62.0
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 4.0e-83 312.4 262 60.3
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 4.0e-83 312.4 261 59.4
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 2.0e-82 310.1 260 60.8
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 4.4e-82 308.9 258 60.5
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 7.6e-82 308.1 258 60.9
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.6e-82 308.1 255 62.7
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 7.6e-82 308.1 192 75.0
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-81 306.6 255 62.7
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.9e-81 306.2 255 62.4
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 3.8e-81 305.8 286 53.5
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.9e-81 305.4 255 62.0
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 6.4e-81 305.1 255 62.4
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-80 304.3 255 62.0
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-80 304.3 255 62.0
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.4e-80 303.9 258 59.3
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.4e-80 303.1 254 62.2
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.4e-80 303.1 254 62.2
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 4.1e-80 302.4 252 61.9
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 9.2e-80 301.2 258 58.9
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 9.2e-80 301.2 258 58.9
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 2.3e-78 296.6 259 58.7
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 2.3e-78 296.6 259 58.7
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 3.0e-78 296.2 260 58.5
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 3.9e-78 295.8 256 57.8
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.5e-77 293.9 265 58.5
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 5.6e-77 292.0 248 60.1
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.6e-77 291.2 252 61.5
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 8.1e-76 288.1 264 55.3
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.1e-75 287.7 256 55.9
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.4e-75 287.3 257 56.4
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.2e-74 284.3 256 54.7
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.7e-73 280.4 206 65.0
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 6.0e-71 271.9 273 53.1
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.0e-70 271.2 256 53.1
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 1.7e-70 270.4 266 54.9
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 2.3e-70 270.0 258 52.3
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 8.7e-70 268.1 261 49.8
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 1.4e-67 260.8 273 51.6
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-67 260.4 174 70.7
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 5.3e-67 258.8 261 49.8
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 6.9e-67 258.5 257 50.6
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 1.6e-63 247.3 268 47.4
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 2.1e-63 246.9 270 55.9
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 6.7e-62 241.9 157 70.1
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 8.1e-60 235.0 143 75.5
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.4e-53 211.8 184 57.6
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 9.0e-51 204.9 157 69.4
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.5e-50 204.1 202 55.9
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 2.7e-47 193.4 190 55.8
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 5.1e-38 162.5 151 60.9
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 1.5e-37 161.0 110 64.5
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 4.3e-37 159.5 129 56.6
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 8.5e-33 145.2 103 62.1
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.9e-24 117.5 137 47.4
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 8.0e-23 112.1 205 36.1
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 2.0e-21 107.5 210 31.9
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 2.2e-20 104.0 164 34.8
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 1.2e-18 98.2 226 30.5
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 2.2e-17 94.0 56 64.3
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 5.0e-17 92.8 71 60.6
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 1.5e-16 91.3 52 80.8
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.4e-16 88.6 86 59.3
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.0e-14 85.1 156 32.1
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.4e-14 84.7 101 49.5
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 1.8e-14 84.3 89 53.9
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 2.6e-13 80.5 51 58.8
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 8.5e-09 65.5 53 56.6
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 1.2e-07 61.6 162 30.9
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 3.6e-07 60.1 246 28.0
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 6.8e-06 55.8 179 27.9


User provided reference genes

Program Settings