Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 3.0e-90 335.1 162 100.0
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 6.9e-79 297.4 162 88.9
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 2.2e-77 292.4 165 87.3
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 1.4e-76 289.7 165 86.1
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 1.9e-76 289.3 165 87.3
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 1.3e-74 283.1 162 85.8
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 1.7e-74 282.7 163 85.9
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 1.3e-72 276.6 167 83.8
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 4.8e-72 274.6 167 82.6
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 9.9e-70 266.9 164 79.3
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 1.9e-65 252.7 164 76.8
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 9.0e-63 243.8 161 71.4
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.2e-61 239.2 162 72.2
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.8e-61 238.4 162 71.6
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 3.8e-61 238.4 162 71.6
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 4.9e-61 238.0 162 72.2
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 5.5e-60 234.6 162 67.9
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 7.1e-60 234.2 162 71.6
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 3.5e-59 231.9 163 69.3
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 1.0e-58 230.3 162 69.8
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 3.9e-58 228.4 162 66.7
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 5.1e-58 228.0 162 66.0
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 8.7e-58 227.3 163 66.9
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 1.9e-57 226.1 162 66.0
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.3e-57 225.3 180 64.4
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 3.3e-57 225.3 165 66.7
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 4.3e-57 224.9 162 67.9
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 4.3e-57 224.9 161 65.8
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 5.7e-57 224.6 164 67.7
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 5.7e-57 224.6 162 68.5
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 5.7e-57 224.6 164 67.1
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 5.7e-57 224.6 161 65.8
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 5.7e-57 224.6 162 69.1
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 9.6e-57 223.8 164 68.9
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 9.6e-57 223.8 162 67.9
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 9.6e-57 223.8 161 64.6
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 9.6e-57 223.8 161 62.7
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 1.6e-56 223.0 163 66.3
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 1.6e-56 223.0 163 67.5
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.6e-56 223.0 161 65.8
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 2.1e-56 222.6 162 64.2
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 2.8e-56 222.2 162 66.7
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 2.8e-56 222.2 161 67.1
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 2.8e-56 222.2 161 64.0
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 4.8e-56 221.5 163 66.3
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 4.8e-56 221.5 162 65.4
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 6.3e-56 221.1 161 62.1
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 6.3e-56 221.1 162 63.6
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 6.3e-56 221.1 162 64.2
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 8.2e-56 220.7 161 66.5
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 1.1e-55 220.3 162 66.0
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 1.1e-55 220.3 162 65.4
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 1.8e-55 219.5 164 66.5
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 3.1e-55 218.8 162 66.0
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 4.1e-55 218.4 163 64.4
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 5.3e-55 218.0 160 65.6
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 5.3e-55 218.0 162 64.2
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 1.5e-54 216.5 162 64.8
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 2.6e-54 215.7 161 65.8
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 2.6e-54 215.7 161 63.4
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 3.4e-54 215.3 175 59.4
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 5.9e-54 214.5 162 63.6
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 1.0e-53 213.8 162 64.2
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 1.3e-53 213.4 164 63.4
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 1.7e-53 213.0 162 63.0
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 5.0e-53 211.5 163 63.8
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 6.5e-53 211.1 163 62.0
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 6.5e-53 211.1 169 62.7
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 8.4e-53 210.7 187 57.8
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 8.4e-53 210.7 160 63.8
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 3.2e-52 208.8 162 63.0
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 3.2e-52 208.8 158 61.4
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 4.2e-52 208.4 159 61.6
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 3.5e-51 205.3 164 60.4
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 3.5e-51 205.3 161 62.7
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 7.9e-51 204.1 159 63.5
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 1.0e-50 203.8 161 59.6
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 1.3e-50 203.4 206 53.9
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 3.9e-50 201.8 164 59.8
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 6.7e-50 201.1 161 58.4
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 1.1e-47 193.7 160 59.4
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 4.1e-47 191.8 162 57.4
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 9.0e-47 190.7 164 54.9
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 1.5e-46 189.9 150 64.0
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 7.7e-46 187.6 174 53.4
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 3.8e-45 185.3 171 51.5
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 9.4e-44 180.6 162 53.7
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 9.1e-39 164.1 149 60.4
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 7.9e-35 151.0 164 48.8
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 2.6e-33 146.0 92 71.7
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 5.0e-29 131.7 110 67.3
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 1.6e-27 126.7 160 41.9
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 8.8e-26 120.9 60 83.3
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 5.7e-25 118.2 158 38.0
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 5.3e-23 111.7 103 53.4
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.6e-22 110.2 160 38.8
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 2.3e-18 96.3 102 53.9
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 1.1e-15 87.4 41 95.1
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 1.1e-15 87.4 41 95.1
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 7.0e-15 84.7 77 55.8
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 7.7e-14 81.3 42 85.7
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 2.2e-13 79.7 44 77.3
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 9.5e-12 74.3 43 72.1
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 3.0e-10 69.3 70 61.4
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-09 65.9 68 42.6
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 2.0e-06 56.6 40 62.5
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 5.9e-06 55.1 130 28.5


User provided reference genes

Program Settings