Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 2.9e-205 718.4 371 100.0
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 2.3e-186 655.6 371 90.8
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 6.6e-186 654.1 371 90.8
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 7.3e-185 650.6 371 90.8
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 5.2e-183 644.4 373 89.3
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 1.2e-182 643.3 371 89.2
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 9.9e-182 640.2 371 89.2
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 2.9e-181 638.6 371 89.8
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 2.9e-181 638.6 362 91.4
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 2.9e-181 638.6 373 89.0
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 8.4e-181 637.1 385 87.3
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 2.1e-176 622.5 380 86.1
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 1.5e-174 616.3 377 84.9
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 1.1e-172 610.1 371 86.0
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 1.0e-162 577.0 322 90.7
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 2.8e-160 568.9 322 89.1
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 2.8e-160 568.9 322 89.1
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 4.8e-160 568.2 317 89.6
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 4.0e-159 565.1 322 89.1
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 1.3e-157 560.1 326 87.1
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 7.1e-156 554.3 388 75.8
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 5.9e-142 508.1 384 70.1
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 1.3e-141 506.9 369 75.6
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 3.8e-141 505.4 353 73.9
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 1.4e-140 503.4 358 72.1
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.4e-140 503.4 380 70.8
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 1.4e-140 503.4 380 70.8
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 1.2e-139 500.4 382 70.2
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 2.7e-139 499.2 378 70.6
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 7.9e-139 497.7 382 70.9
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.0e-138 497.3 380 70.0
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 2.3e-138 496.1 368 70.4
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 2.3e-138 496.1 380 69.5
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 1.1e-137 493.8 360 72.5
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 1.1e-137 493.8 357 71.7
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 2.0e-137 493.0 356 71.9
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 2.0e-137 493.0 382 68.6
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 3.3e-137 492.3 377 70.0
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 5.7e-137 491.5 357 71.1
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 7.4e-137 491.1 375 68.5
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 7.4e-137 491.1 394 67.8
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 7.4e-137 491.1 356 72.8
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 9.7e-137 490.7 356 70.2
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 1.7e-136 490.0 356 70.8
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 2.2e-136 489.6 380 72.9
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 1.1e-135 487.3 369 69.9
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 1.4e-135 486.9 380 68.9
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 1.8e-135 486.5 387 67.2
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 2.4e-135 486.1 313 78.0
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 6.9e-135 484.6 360 70.6
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 9.1e-135 484.2 355 70.1
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.2e-134 483.8 369 67.8
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 1.5e-134 483.4 387 66.9
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 3.4e-134 482.3 364 69.8
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 3.4e-134 482.3 361 70.4
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 4.5e-134 481.9 353 70.8
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 4.5e-134 481.9 357 69.7
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 7.7e-134 481.1 352 70.2
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 7.7e-134 481.1 321 75.1
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 1.3e-133 480.3 257 93.8
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 1.7e-133 479.9 361 69.5
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 3.8e-133 478.8 364 69.2
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 6.5e-133 478.0 415 63.6
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.1e-132 477.2 350 70.3
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 1.0e-130 470.7 374 66.8
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 5.1e-130 468.4 361 68.7
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 6.7e-130 468.0 365 67.7
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 6.7e-130 468.0 326 71.8
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 8.8e-130 467.6 388 65.5
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 2.0e-129 466.5 317 74.4
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 3.3e-129 465.7 351 68.7
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 7.4e-129 464.5 411 61.6
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 1.7e-128 463.4 314 73.9
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 3.7e-128 462.2 359 68.0
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 3.7e-128 462.2 364 68.1
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 6.3e-128 461.5 362 65.7
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 6.3e-128 461.5 356 67.1
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 1.4e-127 460.3 371 65.8
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 1.8e-127 459.9 325 71.4
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 2.4e-127 459.5 371 66.0
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 3.1e-127 459.1 359 67.7
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 4.1e-127 458.8 354 69.2
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 4.1e-127 458.8 325 71.4
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 2.9e-125 452.6 370 65.4
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 3.8e-125 452.2 314 73.9
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 1.9e-124 449.9 349 66.5
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 9.4e-124 447.6 317 72.2
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 1.6e-123 446.8 360 65.6
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 2.1e-123 446.4 350 66.6
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.7e-123 446.0 386 63.5
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 4.7e-123 445.3 361 65.1
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 1.0e-122 444.1 317 69.1
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 1.8e-122 443.4 370 63.2
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 1.8e-122 443.4 369 65.3
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 1.5e-121 440.3 394 59.1
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 9.7e-121 437.6 387 63.0
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 2.8e-120 436.0 292 75.3
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.8e-119 433.3 290 75.5
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 5.3e-119 431.8 428 57.5
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 1.6e-118 430.3 285 76.1
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 4.5e-118 428.7 321 69.2
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 1.3e-117 427.2 372 63.4
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 1.4e-114 417.2 313 69.3
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.2e-113 414.1 351 65.0
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 1.0e-109 401.0 265 75.1
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 1.3e-109 400.6 250 78.4
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.5e-105 387.1 258 76.0
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.4e-103 380.6 317 61.2
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 1.2e-102 377.5 302 60.9
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 2.4e-95 353.2 293 62.5
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 5.4e-95 352.1 326 54.3
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 4.4e-89 332.4 374 54.3
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 1.3e-88 330.9 244 69.3
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 4.9e-88 328.9 379 52.0
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 5.0e-85 318.9 309 57.0
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 2.1e-83 313.5 283 56.5
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 3.6e-83 312.8 336 52.1
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 2.0e-81 307.0 199 76.9
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 2.7e-78 296.6 387 47.5
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 4.3e-76 289.3 277 57.8
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.7e-72 277.3 201 71.6
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 2.5e-68 263.5 179 73.2
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 7.6e-65 251.9 334 40.4
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.7e-64 250.8 204 68.1
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.9e-63 247.3 190 65.8
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 8.7e-61 238.4 189 65.1
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 1.9e-60 237.3 350 39.4
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 3.3e-60 236.5 201 63.7
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 7.6e-57 225.3 168 67.9
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.7e-56 224.2 203 59.1
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.2e-54 218.0 169 69.8
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 1.2e-54 218.0 351 41.0
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.4e-50 204.5 133 73.7
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.4e-50 203.8 187 58.3
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 9.3e-47 191.8 182 60.4
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 3.0e-45 186.8 288 37.8
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 3.3e-44 183.3 299 38.8
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 8.1e-43 178.7 121 67.8
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 2.2e-40 170.6 363 33.1
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.8e-34 151.0 129 58.9
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 5.3e-34 149.4 125 64.0
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 2.3e-29 134.0 162 49.4
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 1.2e-25 121.7 95 69.5
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 5.5e-23 112.8 87 69.0
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.6e-22 111.3 308 31.5
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 1.5e-20 104.8 67 74.6
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 7.4e-20 102.4 77 63.6
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 7.4e-12 75.9 71 57.7
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.3e-08 65.1 47 66.0
A10p20470 Brassica napus HOM05D004989 ORTHO05D039594 1.6e-06 58.2 42 71.4


User provided reference genes

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