Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 3.5e-101 371.7 196 100.0
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 4.5e-93 344.7 194 85.6
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 5.0e-92 341.3 194 84.5
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 2.1e-90 335.9 196 83.2
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 5.2e-89 331.3 195 86.7
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 9.8e-88 327.0 194 81.4
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 5.0e-84 314.7 196 87.2
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 4.7e-82 308.1 196 79.1
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 4.7e-82 308.1 192 82.3
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 6.1e-82 307.8 192 87.0
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 1.0e-81 307.0 192 80.7
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 1.0e-81 307.0 192 80.7
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 6.8e-81 304.3 192 86.5
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.2e-80 303.5 193 81.9
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 5.6e-75 284.6 197 74.1
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 4.7e-74 281.6 210 75.7
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 8.0e-74 280.8 207 71.5
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 9.8e-72 273.9 200 76.0
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.1e-70 270.4 241 63.5
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 1.1e-70 270.4 200 73.5
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 1.2e-69 266.9 200 69.5
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 1.6e-69 266.5 204 68.6
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 2.1e-69 266.2 200 70.0
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 2.7e-69 265.8 198 67.7
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 3.5e-69 265.4 202 67.3
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 4.6e-69 265.0 194 69.6
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 6.0e-69 264.6 203 71.4
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 7.8e-69 264.2 195 69.7
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.3e-68 263.5 205 67.3
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 1.3e-68 263.5 203 71.4
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.3e-68 263.5 209 68.9
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 3.9e-68 261.9 197 70.6
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.9e-68 261.9 201 68.2
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 3.9e-68 261.9 201 72.6
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 5.0e-68 261.5 207 72.9
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 5.0e-68 261.5 202 72.8
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 5.0e-68 261.5 205 66.8
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 5.0e-68 261.5 197 70.6
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 6.6e-68 261.2 200 69.5
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 6.6e-68 261.2 210 65.7
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 8.6e-68 260.8 199 74.4
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.1e-67 260.4 206 71.8
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 1.9e-67 259.6 195 74.9
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.9e-67 259.6 202 68.3
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 1.9e-67 259.6 200 71.5
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 2.5e-67 259.2 210 64.8
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 3.3e-67 258.8 200 73.0
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 5.6e-67 258.1 208 67.3
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 5.6e-67 258.1 169 81.1
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 7.3e-67 257.7 193 74.6
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 7.3e-67 257.7 210 71.4
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 9.5e-67 257.3 202 66.8
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 2.1e-66 256.1 195 67.2
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 2.1e-66 256.1 193 75.1
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 2.1e-66 256.1 198 71.2
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.1e-66 256.1 204 67.2
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 2.8e-66 255.8 207 66.7
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 3.6e-66 255.4 205 70.7
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 8.1e-66 254.2 204 69.1
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 1.1e-65 253.8 193 72.0
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 1.1e-65 253.8 206 70.4
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 2.3e-65 252.7 208 64.9
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 3.1e-65 252.3 205 65.4
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 4.0e-65 251.9 199 71.4
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 6.8e-65 251.1 131 89.3
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 6.8e-65 251.1 132 87.1
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 6.8e-65 251.1 202 70.8
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.2e-64 250.4 201 66.7
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 1.5e-64 250.0 138 85.5
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 2.6e-64 249.2 200 64.0
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 3.4e-64 248.8 195 73.8
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 7.5e-64 247.7 201 66.2
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 9.9e-64 247.3 201 72.6
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 9.9e-64 247.3 196 74.0
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.3e-63 246.9 134 85.1
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 1.7e-63 246.5 212 62.7
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.7e-63 246.5 196 73.5
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 2.9e-63 245.7 197 72.1
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 3.7e-63 245.4 197 72.1
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 3.7e-63 245.4 189 72.0
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 4.9e-63 245.0 200 66.5
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 4.9e-63 245.0 188 74.5
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 6.4e-63 244.6 200 68.0
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 8.3e-63 244.2 196 72.4
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 1.1e-62 243.8 133 85.0
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 1.4e-62 243.4 186 71.5
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 9.2e-62 240.7 196 63.8
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 1.2e-61 240.4 180 73.3
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 3.9e-60 235.3 119 88.2
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 6.6e-60 234.6 203 70.0
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 6.6e-60 234.6 200 67.0
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.1e-59 233.8 196 69.9
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 1.9e-59 233.0 140 80.0
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 3.3e-59 232.3 139 82.7
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.3e-59 232.3 139 82.7
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 5.6e-59 231.5 203 69.0
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.2e-58 230.3 199 68.8
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.6e-58 228.8 139 82.0
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 4.7e-58 228.4 121 86.8
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.4e-57 226.9 135 80.7
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 2.4e-57 226.1 132 78.8
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 6.8e-57 224.6 206 64.6
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 2.0e-56 223.0 122 81.1
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 7.6e-56 221.1 127 80.3
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.2e-55 219.5 111 88.3
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 7.1e-54 214.5 171 63.7
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 1.2e-53 213.8 204 66.2
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.2e-53 213.8 207 61.4
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 3.5e-53 212.2 128 74.2
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 1.9e-51 206.5 126 77.8
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.6e-50 203.4 196 63.3
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 4.7e-50 201.8 112 79.5
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 3.4e-48 195.7 107 84.1
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 4.4e-48 195.3 155 70.3
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 7.6e-48 194.5 206 56.8
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 1.4e-46 190.3 95 91.6
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 2.3e-44 183.0 161 70.2
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 3.9e-44 182.2 91 90.1
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 9.6e-43 177.6 158 59.5
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 9.6e-35 151.0 82 81.7
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.2e-29 134.0 101 56.4
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.8e-28 130.2 211 44.5
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.6e-26 123.6 123 67.5
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 9.0e-25 117.9 93 55.9
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 2.0e-24 116.7 59 86.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 1.3e-23 114.0 124 53.2
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 2.1e-21 106.7 103 49.5
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 7.9e-21 104.8 204 44.1
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 3.7e-18 95.9 83 56.6
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.1e-13 80.1 44 81.8
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 7.9e-13 78.2 127 34.6
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.5e-11 73.9 44 75.0
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 5.7e-11 72.0 85 45.9
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 1.3e-07 60.8 83 44.6
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.9e-07 59.7 102 43.1
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 8.5e-07 58.2 28 85.7


User provided reference genes

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