Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR192430 Cardamine hirsuta HOM05D000018 ORTHO05D043184 1.7e-45 185.7 93 100.0
CARHR192400 Cardamine hirsuta HOM05D000018 ORTHO05D001040 7.3e-33 143.7 76 93.4
AT5G20400 Arabidopsis thaliana HOM05D000018 ORTHO05D001040 4.1e-28 127.9 76 82.9
AL6G31960 Arabidopsis lyrata HOM05D000018 ORTHO05D001040 9.2e-28 126.7 76 84.2
Thhalv10013989m.g Eutrema salsugineum HOM05D000018 ORTHO05D001040 9.2e-28 126.7 76 81.6
AL1G56350 Arabidopsis lyrata HOM05D000018 ORTHO05D001040 2.7e-27 125.2 76 80.3
Sp6g24030 Schrenkiella parvula HOM05D000018 ORTHO05D001040 3.5e-27 124.8 77 83.1
CARHR192440 Cardamine hirsuta HOM05D000018 ORTHO05D001040 4.6e-27 124.4 76 82.9
Carub.0006s1887 Capsella rubella HOM05D000018 ORTHO05D001040 5.1e-26 120.9 76 78.9
Carub.0001s3856 Capsella rubella HOM05D000018 ORTHO05D001040 1.9e-25 119.0 76 80.3
AT5G20550 Arabidopsis thaliana HOM05D000018 ORTHO05D001040 2.5e-25 118.6 76 78.9
BcaB08g36499 Brassica carinata HOM05D000018 ORTHO05D001040 2.5e-25 118.6 77 77.9
AT1G49390 Arabidopsis thaliana HOM05D000018 ORTHO05D001040 3.3e-25 118.2 76 75.0
A10p19580 Brassica napus HOM05D000018 ORTHO05D001040 4.3e-25 117.9 76 76.3
BraA10t44033Z Brassica rapa HOM05D000018 ORTHO05D001040 4.3e-25 117.9 76 76.3
Carub.0001s3857 Capsella rubella HOM05D000018 ORTHO05D001040 5.6e-25 117.5 76 75.0
BcaC04g19429 Brassica carinata HOM05D000018 ORTHO05D001040 1.6e-24 115.9 76 77.6
C03p11610 Brassica napus HOM05D000018 ORTHO05D001040 1.6e-24 115.9 75 77.3
C09p55780 Brassica napus HOM05D000018 ORTHO05D001040 1.6e-24 115.9 76 77.6
BolC9t58447H Brassica oleracea HOM05D000018 ORTHO05D001040 1.6e-24 115.9 76 77.6
Carub.0006s1878 Capsella rubella HOM05D000018 ORTHO05D001040 1.6e-24 115.9 76 76.3
Sp4g12070 Schrenkiella parvula HOM05D000018 ORTHO05D001040 2.1e-24 115.5 76 75.0
AL8G29140 Arabidopsis lyrata HOM05D000018 ORTHO05D001040 1.4e-23 112.8 77 74.0
CARHR267190 Cardamine hirsuta HOM05D000018 ORTHO05D001040 2.3e-23 112.1 75 74.7
BraA03t10319Z Brassica rapa HOM05D000018 ORTHO05D001040 1.2e-22 109.8 75 74.7
Thhalv10013988m.g Eutrema salsugineum HOM05D000018 ORTHO05D001040 1.2e-22 109.8 76 68.4
A03p10080 Brassica napus HOM05D000018 ORTHO05D001040 2.0e-22 109.0 75 76.0
THA.LOC104811012 Tarenaya hassleriana HOM05D000018 ORTHO05D001040 2.0e-22 109.0 76 75.0
AT5G54000 Arabidopsis thaliana HOM05D000018 ORTHO05D001040 9.9e-22 106.7 77 71.4
Carub.0008s1430 Capsella rubella HOM05D000018 ORTHO05D001040 1.3e-21 106.3 77 70.1
CARHR267200 Cardamine hirsuta HOM05D000018 ORTHO05D001040 2.2e-21 105.5 75 70.7
A02p10600 Brassica napus HOM05D000018 ORTHO05D001040 4.9e-21 104.4 76 67.1
BraA02t06125Z Brassica rapa HOM05D000018 ORTHO05D001040 4.9e-21 104.4 76 67.1
THA.LOC104811014 Tarenaya hassleriana HOM05D000018 ORTHO05D001040 4.9e-21 104.4 76 72.4
CARHR267180 Cardamine hirsuta HOM05D000018 ORTHO05D001040 6.4e-21 104.0 76 69.7
Sp6g24020 Schrenkiella parvula HOM05D000018 ORTHO05D001040 1.4e-20 102.8 75 72.0
Aa31LG1G14320 Aethionema arabicum HOM05D000018 ORTHO05D001040 6.0e-19 97.4 76 64.5
THA.LOC104811013 Tarenaya hassleriana HOM05D000018 ORTHO05D001040 3.0e-18 95.1 76 68.4
CARHR267170 Cardamine hirsuta HOM05D000018 ORTHO05D001040 1.9e-17 92.4 76 61.8
BraA10t43225Z Brassica rapa HOM05D000018 ORTHO05D001040 5.6e-17 90.9 68 72.1
BolC3t13632H Brassica oleracea HOM05D000018 ORTHO05D001040 4.7e-16 87.8 65 70.8
Sp6g16070 Schrenkiella parvula HOM05D000167 ORTHO05D000640 4.4e-14 81.3 61 68.9
BcaC04g20398 Brassica carinata HOM05D000018 ORTHO05D001040 2.7e-11 72.0 69 62.3
Hma1.2p1_0343F.1_g130820 Hydrangea macrophylla HOM05D000018 ORTHO05D001040 3.0e-10 68.6 75 50.7
GSVIVG01012842001 Vitis vinifera HOM05D000018 ORTHO05D001040 8.7e-10 67.0 70 50.0
Nitab4.5_0000704g0090 Nicotiana tabacum HOM05D000018 ORTHO05D001040 1.1e-09 66.6 72 47.2
Cpa.g.sc277.8 Carica papaya HOM05D000018 ORTHO05D001040 1.5e-09 66.2 77 50.6
Ciclev10005267m.g Citrus clementina HOM05D000018 ORTHO05D001040 5.6e-09 64.3 72 45.8
Cc06_g07740 Coffea canephora HOM05D000018 ORTHO05D001040 9.6e-09 63.5 77 48.1
Actinidia21929 Actinidia chinensis HOM05D000018 ORTHO05D001040 3.6e-08 61.6 72 43.1
BolC9t57285H Brassica oleracea HOM05D000018 ORTHO05D043184 4.8e-08 61.2 75 50.7
C09p44030 Brassica napus HOM05D000018 ORTHO05D001040 8.1e-08 60.5 49 63.3
MD02G1020000 Malus domestica HOM05D000018 ORTHO05D001040 1.8e-07 59.3 78 43.6
Nitab4.5_0003587g0030 Nicotiana tabacum HOM05D000018 ORTHO05D001040 1.8e-07 59.3 72 44.4
Rhsim01G0050400 Rhododendron simsii HOM05D000018 ORTHO05D001040 2.4e-07 58.9 72 43.1
Rhsim01G0055600 Rhododendron simsii HOM05D000018 ORTHO05D001040 2.4e-07 58.9 72 43.1
CAN.G467.14 Capsicum annuum HOM05D000018 ORTHO05D001040 4.0e-07 58.2 72 45.8
MD14G1108800 Malus domestica HOM05D000018 ORTHO05D001040 5.3e-07 57.8 89 38.2
Peaxi162Scf00088g00818 Petunia axillaris HOM05D000018 ORTHO05D001040 6.9e-07 57.4 72 45.8
Sc17g0004420 Simmondsia chinensis HOM05D000018 ORTHO05D001040 6.9e-07 57.4 70 44.3
Prupe.4G248300 Prunus persica HOM05D000018 ORTHO05D001040 9.0e-07 57.0 75 41.3
Rhsim01G0058400 Rhododendron simsii HOM05D000018 ORTHO05D001040 9.0e-07 57.0 69 43.5
AUR62024941 Chenopodium quinoa HOM05D000018 ORTHO05D001040 1.2e-06 56.6 64 46.9
vmacro07743 Vaccinium macrocarpon HOM05D000018 ORTHO05D001040 1.2e-06 56.6 72 43.1
Lj9A703T42 Lonicera japonica HOM05D000018 ORTHO05D001040 1.5e-06 56.2 76 42.1
Rhsim01G0056800 Rhododendron simsii HOM05D000018 ORTHO05D001040 1.5e-06 56.2 69 43.5
Actinidia07340 Actinidia chinensis HOM05D000018 ORTHO05D001040 2.0e-06 55.8 70 45.7
Gohir.D08G100900 Gossypium hirsutum HOM05D000018 ORTHO05D001040 2.0e-06 55.8 74 44.6
Prupe.4G248600 Prunus persica HOM05D000018 ORTHO05D001040 2.0e-06 55.8 74 41.9
Rhsim01G0056200 Rhododendron simsii HOM05D000018 ORTHO05D001040 2.6e-06 55.5 69 42.0
MD02G1019700 Malus domestica HOM05D000018 ORTHO05D001040 3.4e-06 55.1 80 42.5
MD14G1108700 Malus domestica HOM05D000018 ORTHO05D001040 3.4e-06 55.1 78 42.3
Ah.15g090660 Amaranthus hybridus HOM05D000018 ORTHO05D001040 4.4e-06 54.7 73 47.9
Duzib168G1972 Durio zibethinus HOM05D000018 ORTHO05D001040 4.4e-06 54.7 74 48.6
Eucgr.C00494 Eucalyptus grandis HOM05D000018 ORTHO05D001040 4.4e-06 54.7 75 42.7
Cfa002277 Carpinus fangiana HOM05D000018 ORTHO05D001040 5.8e-06 54.3 72 45.8
Gorai.004G108800 Gossypium raimondii HOM05D000018 ORTHO05D001040 7.6e-06 53.9 74 44.6
Prupe.4G248200 Prunus persica HOM05D000018 ORTHO05D001040 7.6e-06 53.9 83 42.2
AUR62036975 Chenopodium quinoa HOM05D000018 ORTHO05D001040 9.9e-06 53.5 72 44.4
Haze_25457 Corylus avellana HOM05D000018 ORTHO05D001040 9.9e-06 53.5 72 45.8
Gohir.A08G089600 Gossypium hirsutum HOM05D000018 ORTHO05D001040 9.9e-06 53.5 74 43.2
Prupe.4G248400 Prunus persica HOM05D000018 ORTHO05D001040 9.9e-06 53.5 74 41.9
QL02p090427 Quercus lobata HOM05D000018 ORTHO05D001040 9.9e-06 53.5 72 44.4


User provided reference genes

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