Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 6.6e-125 450.7 222 100.0
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.9e-95 352.8 193 88.6
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 7.4e-92 340.9 195 85.1
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.3e-91 340.1 195 84.6
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 1.3e-91 340.1 195 85.6
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 1.1e-90 337.0 195 83.6
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 3.1e-90 335.5 193 86.0
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 9.1e-90 334.0 195 84.6
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 5.9e-89 331.3 194 82.0
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 1.0e-88 330.5 195 83.1
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 3.8e-88 328.6 195 82.6
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 3.8e-88 328.6 195 82.6
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.4e-87 326.6 193 80.8
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 8.8e-85 317.4 194 77.8
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 1.8e-82 309.7 197 76.1
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 2.7e-78 295.8 192 72.9
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 1.0e-77 293.9 193 74.6
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 5.2e-77 291.6 192 74.0
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 2.0e-76 289.7 192 72.4
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.3e-75 287.0 195 71.3
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 1.3e-75 287.0 195 71.3
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 2.2e-75 286.2 199 70.9
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 4.8e-75 285.0 195 71.3
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 5.3e-74 281.6 199 70.4
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 2.7e-73 279.3 195 69.7
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.0e-72 277.3 200 68.5
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 3.8e-72 275.4 191 70.2
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.1e-71 273.9 192 69.8
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 1.5e-71 273.5 186 69.9
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 5.5e-71 271.6 193 67.9
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 7.2e-71 271.2 203 66.0
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 9.4e-71 270.8 192 69.8
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.2e-70 270.4 193 68.4
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.2e-70 270.4 201 66.2
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 1.6e-70 270.0 193 67.4
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 3.6e-70 268.9 192 69.3
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 3.6e-70 268.9 193 66.8
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 4.7e-70 268.5 191 67.5
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 8.0e-70 267.7 193 66.8
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.4e-69 266.9 190 65.8
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.4e-69 266.9 190 67.4
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 1.4e-69 266.9 193 66.8
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 3.0e-69 265.8 193 64.8
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 3.0e-69 265.8 188 68.1
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 4.0e-69 265.4 178 70.2
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 4.0e-69 265.4 203 65.5
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 5.2e-69 265.0 200 63.5
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.2e-68 263.8 201 64.7
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 2.0e-68 263.1 192 68.8
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 3.4e-68 262.3 201 64.7
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 3.4e-68 262.3 192 68.2
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 5.7e-68 261.5 192 66.1
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 9.8e-68 260.8 196 63.8
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 9.8e-68 260.8 197 63.5
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.7e-67 260.0 194 64.9
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 2.2e-67 259.6 189 65.6
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 3.7e-67 258.8 197 65.5
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 6.3e-67 258.1 202 62.9
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 2.4e-66 256.1 181 69.1
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 3.1e-66 255.8 194 61.3
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 3.1e-66 255.8 199 64.3
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.2e-65 253.8 195 64.1
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 1.2e-65 253.8 180 68.3
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.2e-65 253.8 194 63.4
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 2.0e-65 253.1 194 62.9
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 2.0e-65 253.1 194 65.5
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.0e-65 253.1 175 71.4
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 5.9e-65 251.5 198 63.6
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.0e-64 250.8 190 65.8
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 2.2e-64 249.6 198 62.1
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 5.0e-64 248.4 169 68.0
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 1.9e-63 246.5 169 67.5
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 5.5e-63 245.0 195 61.5
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 7.2e-63 244.6 193 62.7
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 4.7e-62 241.9 189 61.4
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 8.0e-62 241.1 198 58.6
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.0e-61 240.7 168 68.5
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 1.4e-61 240.4 178 64.6
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 4.0e-61 238.8 208 57.2
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 1.2e-60 237.3 187 62.6
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 2.0e-60 236.5 191 60.7
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 3.4e-60 235.7 206 59.7
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 1.8e-58 229.9 193 61.7
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 9.5e-55 217.6 177 57.1
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 2.1e-54 216.5 198 56.1
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 6.8e-53 211.5 190 53.7
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 4.4e-52 208.8 187 55.1
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 4.4e-52 208.8 186 55.9
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 1.8e-50 203.4 196 53.1
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 4.3e-47 192.2 148 62.8
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 2.1e-46 189.9 161 59.6
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 1.0e-45 187.6 191 53.4
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 8.9e-45 184.5 187 51.9
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 9.8e-44 181.0 197 47.2
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 4.1e-42 175.6 198 48.5
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 6.0e-33 145.2 90 78.9
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 1.9e-31 140.2 116 56.0
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.8e-29 133.7 89 69.7
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 5.2e-29 132.1 80 81.2
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 4.4e-28 129.0 77 79.2
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 1.3e-24 117.5 81 69.1
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 4.3e-23 112.5 95 62.1
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 1.2e-22 110.9 79 69.6
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 3.6e-22 109.4 78 69.2
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 2.0e-20 103.6 160 41.2
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.2e-19 100.1 94 51.1
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 1.4e-18 97.4 96 51.0
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.1e-13 79.7 164 31.1
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 9.3e-10 68.2 139 34.5
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 2.7e-09 66.6 168 28.6
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 4.6e-09 65.9 171 28.7
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 6.0e-09 65.5 173 28.3
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 7.9e-09 65.1 175 31.4
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 3.0e-08 63.2 168 29.2
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 6.7e-08 62.0 171 26.3
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 8.7e-08 61.6 171 26.3
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 1.1e-07 61.2 171 26.9
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 1.1e-07 61.2 170 26.5
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.5e-07 60.8 171 31.0
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 1.5e-07 60.8 171 26.9
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 3.3e-07 59.7 171 26.3
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 3.3e-07 59.7 171 26.3
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 3.3e-07 59.7 171 26.3
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 5.6e-07 58.9 174 27.0
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 9.6e-07 58.2 170 24.1
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 9.6e-07 58.2 181 27.1
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 9.6e-07 58.2 181 27.1
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 9.6e-07 58.2 209 26.3
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.6e-06 57.4 170 26.5
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.6e-06 57.4 171 25.7
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.1e-06 57.0 185 24.3
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 2.1e-06 57.0 171 25.7
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.1e-06 57.0 186 27.4
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.1e-06 57.0 177 29.9
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.1e-06 57.0 171 25.7
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 2.1e-06 57.0 169 27.2
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 2.8e-06 56.6 171 26.3
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.8e-06 56.6 171 28.1
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 3.6e-06 56.2 179 27.4
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 4.8e-06 55.8 175 26.3
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 8.1e-06 55.1 175 27.4
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 8.1e-06 55.1 49 51.0
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 8.1e-06 55.1 164 26.2


User provided reference genes

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