Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.6e-82 309.3 146 100.0
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 5.6e-72 274.2 151 89.4
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.8e-71 271.9 151 87.4
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.8e-71 271.9 151 88.1
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.4e-70 269.6 150 88.7
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.3e-65 252.3 151 86.1
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 5.1e-65 251.1 151 83.4
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.6e-65 250.8 150 84.7
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 3.3e-64 248.4 150 81.3
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 7.3e-64 247.3 151 82.1
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 2.1e-63 245.7 150 80.0
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 4.0e-62 241.5 150 77.3
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 4.0e-62 241.5 150 80.0
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 5.3e-62 241.1 150 78.7
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 6.9e-62 240.7 151 80.1
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.5e-61 239.6 150 79.3
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.3e-60 236.5 151 78.1
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.7e-60 236.1 154 79.9
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.7e-60 236.1 154 79.9
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.7e-60 236.1 154 79.9
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 2.9e-60 235.3 154 77.9
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 2.9e-60 235.3 151 76.2
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 3.8e-60 235.0 154 77.3
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 3.8e-60 235.0 154 77.3
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 6.4e-60 234.2 149 81.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 6.4e-60 234.2 149 81.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 6.4e-60 234.2 149 81.2
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 8.4e-60 233.8 154 79.2
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 1.1e-59 233.4 154 79.2
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 1.1e-59 233.4 151 75.5
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 7.1e-59 230.7 150 74.7
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 9.3e-59 230.3 150 74.0
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.2e-58 229.9 150 73.3
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.6e-58 229.6 150 73.3
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 1.6e-58 229.6 150 72.7
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 7.9e-58 227.3 150 72.7
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.0e-57 226.9 155 78.1
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.0e-57 226.9 150 71.3
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 2.3e-57 225.7 150 78.0
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 2.3e-57 225.7 150 78.0
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 2.3e-57 225.7 150 74.7
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 3.0e-57 225.3 150 77.3
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 3.0e-57 225.3 150 77.3
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 5.1e-57 224.6 151 73.5
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 5.1e-57 224.6 150 72.7
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 5.1e-57 224.6 150 74.0
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 6.7e-57 224.2 151 74.8
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 6.7e-57 224.2 150 70.7
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 8.7e-57 223.8 150 74.7
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 8.7e-57 223.8 150 74.7
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 8.7e-57 223.8 152 75.7
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-56 223.4 135 80.0
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 1.1e-56 223.4 150 73.3
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.5e-56 223.0 150 70.7
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.5e-56 223.0 150 72.7
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 1.9e-56 222.6 151 72.2
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.5e-56 222.2 154 77.9
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 2.5e-56 222.2 150 71.3
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 2.5e-56 222.2 154 72.1
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.5e-56 222.2 150 72.0
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 2.5e-56 222.2 150 72.0
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 2.5e-56 222.2 150 72.0
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 2.5e-56 222.2 150 72.0
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.5e-56 222.2 150 72.0
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 2.5e-56 222.2 152 72.4
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.3e-56 221.9 150 72.0
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 3.3e-56 221.9 150 72.0
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 4.3e-56 221.5 150 72.7
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 4.3e-56 221.5 151 73.5
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 4.3e-56 221.5 151 72.2
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 5.6e-56 221.1 148 70.9
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 5.6e-56 221.1 151 72.2
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 5.6e-56 221.1 151 72.2
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 7.4e-56 220.7 150 71.3
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.6e-56 220.3 150 70.7
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 9.6e-56 220.3 150 71.3
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.6e-55 219.5 151 72.2
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.6e-55 219.5 151 72.8
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.8e-55 218.8 150 70.7
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.8e-55 218.8 150 70.7
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 2.8e-55 218.8 150 70.7
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 3.7e-55 218.4 150 68.7
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 3.7e-55 218.4 155 71.6
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.7e-55 218.4 150 71.3
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 4.8e-55 218.0 150 69.3
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 6.2e-55 217.6 152 70.4
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 8.1e-55 217.2 143 76.9
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 8.1e-55 217.2 150 70.7
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 8.1e-55 217.2 146 73.3
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.1e-54 216.9 150 70.0
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.1e-54 216.9 152 71.7
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.4e-54 216.5 150 70.7
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.4e-54 216.5 151 70.9
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.8e-54 216.1 150 68.7
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.8e-54 216.1 150 70.7
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.8e-54 216.1 150 68.7
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 2.4e-54 215.7 150 68.7
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 3.1e-54 215.3 147 70.1
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 5.3e-54 214.5 151 69.5
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 6.9e-54 214.2 150 70.7
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 9.0e-54 213.8 150 70.0
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 9.0e-54 213.8 152 71.1
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.2e-53 213.4 151 68.2
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 1.5e-53 213.0 150 68.0
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.5e-53 213.0 151 68.9
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.5e-53 213.0 150 70.0
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.5e-53 213.0 150 69.3
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 2.6e-53 212.2 150 70.7
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 2.6e-53 212.2 151 70.2
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 2.6e-53 212.2 151 70.2
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 3.4e-53 211.8 138 74.6
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.9e-53 210.3 144 70.1
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 9.9e-53 210.3 144 70.1
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.3e-52 209.9 144 70.8
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.3e-52 209.9 140 73.6
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 1.7e-52 209.5 152 70.4
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 2.2e-52 209.1 150 68.7
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 2.9e-52 208.8 155 72.9
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 3.8e-52 208.4 150 68.7
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 6.4e-52 207.6 150 68.0
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 6.4e-52 207.6 150 68.0
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 8.4e-52 207.2 150 68.0
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.1e-51 206.8 140 72.1
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.9e-51 206.1 153 68.0
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.4e-51 205.7 150 66.0
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 2.4e-51 205.7 150 67.3
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 2.4e-51 205.7 150 67.3
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 2.4e-51 205.7 152 68.4
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.2e-50 203.4 144 68.8
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.2e-50 203.4 150 64.7
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.3e-49 199.9 148 64.9
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 8.7e-49 197.2 150 63.3
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 2.5e-48 195.7 127 72.4
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.6e-47 193.0 132 72.0
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 2.1e-47 192.6 152 63.8
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 1.4e-46 189.9 151 62.9
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.8e-46 189.5 150 63.3
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.9e-44 182.2 119 71.4
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 3.8e-44 181.8 118 71.2
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 2.5e-43 179.1 150 62.7
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 4.6e-42 174.9 150 62.0
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 2.5e-40 169.1 136 62.5
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 8.2e-39 164.1 103 79.6
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 2.2e-36 156.0 148 58.8
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 6.1e-34 147.9 103 70.9
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 7.4e-32 141.0 152 52.0
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 1.3e-31 140.2 150 54.0
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 8.2e-31 137.5 150 53.3
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 3.1e-30 135.6 99 71.7
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 2.2e-28 129.4 134 50.7
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 9.4e-27 124.0 125 56.8
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.5e-24 116.7 166 42.8
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 1.0e-17 94.0 95 47.4
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 3.3e-16 89.0 69 68.1
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 3.3e-16 89.0 77 64.9
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 3.0e-09 65.9 89 36.0
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.1e-06 57.4 39 64.1


User provided reference genes

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