Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 8.0e-129 463.8 233 100.0
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 1.5e-103 379.8 245 79.2
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.1e-101 373.6 241 78.4
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 5.0e-99 364.8 239 79.5
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 8.6e-99 364.0 246 75.6
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.5e-95 353.2 242 71.9
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 2.0e-95 352.8 236 71.6
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 1.3e-94 350.1 242 71.5
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 2.2e-94 349.4 237 71.3
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 3.9e-91 338.6 237 74.3
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 9.8e-87 323.9 241 69.7
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 1.9e-85 319.7 253 65.6
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.2e-81 307.0 241 66.4
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 8.1e-65 251.1 240 55.0
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.3e-62 243.8 243 53.1
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 6.4e-62 241.5 250 52.4
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.9e-61 240.0 261 49.8
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 7.1e-61 238.0 254 50.0
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 9.3e-61 237.7 234 49.6
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 9.3e-61 237.7 230 53.9
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 2.7e-60 236.1 234 52.1
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 7.9e-60 234.6 228 53.9
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.9e-60 234.6 245 51.0
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.0e-59 234.2 263 49.8
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.0e-59 234.2 236 49.6
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.3e-59 233.8 245 50.6
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 3.0e-59 232.6 243 50.6
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 3.0e-59 232.6 243 50.6
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 1.1e-58 230.7 227 52.9
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.9e-58 229.9 245 49.8
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.5e-58 229.6 243 49.8
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 2.5e-58 229.6 241 50.2
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 3.3e-58 229.2 243 50.2
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 9.6e-58 227.6 244 50.0
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.3e-57 227.3 243 49.4
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 2.1e-57 226.5 236 50.0
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 2.8e-57 226.1 257 49.0
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.8e-57 226.1 243 49.0
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 8.1e-57 224.6 257 49.0
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 8.1e-57 224.6 243 49.0
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.1e-56 224.2 241 49.0
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 1.4e-56 223.8 237 48.1
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 3.1e-56 222.6 261 47.5
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 4.0e-56 222.2 259 47.9
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 1.2e-55 220.7 249 49.8
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.0e-55 219.9 232 49.6
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 3.4e-55 219.2 164 64.6
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 9.9e-55 217.6 231 51.1
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 9.9e-55 217.6 231 51.1
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 1.3e-54 217.2 261 47.1
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 4.9e-54 215.3 236 51.3
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 1.1e-53 214.2 226 49.6
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.1e-53 214.2 250 47.6
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 1.4e-53 213.8 246 47.6
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 1.9e-53 213.4 246 46.3
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 2.4e-53 213.0 248 46.0
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 5.5e-53 211.8 204 53.9
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 5.5e-53 211.8 242 47.5
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 1.6e-52 210.3 245 45.7
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 2.1e-52 209.9 245 46.5
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 2.1e-52 209.9 234 47.4
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 2.7e-52 209.5 255 44.7
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 4.6e-52 208.8 288 42.7
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 3.0e-51 206.1 232 49.1
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 3.0e-51 206.1 248 45.6
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 3.9e-51 205.7 252 44.4
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 3.9e-51 205.7 255 43.5
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 3.9e-51 205.7 255 45.5
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 5.1e-51 205.3 253 44.7
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.1e-50 204.1 236 48.3
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 1.5e-50 203.8 234 48.3
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 2.5e-50 203.0 246 44.7
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 7.4e-50 201.4 241 46.9
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.3e-49 200.7 208 51.0
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.3e-49 200.7 156 61.5
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.6e-49 200.3 174 58.0
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 2.1e-49 199.9 258 41.9
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 3.7e-49 199.1 173 56.6
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 4.8e-49 198.7 156 62.2
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 4.8e-49 198.7 229 45.9
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 6.2e-49 198.4 246 44.3
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 8.2e-49 198.0 243 44.9
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 8.2e-49 198.0 246 43.9
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 1.4e-48 197.2 165 57.0
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 2.4e-48 196.4 242 45.5
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 6.9e-48 194.9 251 42.6
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 9.0e-48 194.5 212 47.2
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 2.0e-47 193.4 243 42.4
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 4.5e-47 192.2 234 47.0
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 4.5e-47 192.2 258 40.3
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.0e-46 191.0 247 42.9
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 1.3e-46 190.7 237 43.0
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.3e-46 190.7 244 41.8
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 2.2e-46 189.9 244 41.8
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.1e-45 187.6 240 43.3
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 4.2e-45 185.7 151 58.3
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 7.1e-45 184.9 148 59.5
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 9.3e-45 184.5 238 42.9
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.0e-44 181.8 229 44.1
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 2.3e-43 179.9 147 58.5
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 3.9e-43 179.1 215 47.9
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 9.7e-42 174.5 153 59.5
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 4.8e-41 172.2 212 43.4
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-40 169.5 158 55.1
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 9.0e-40 167.9 136 58.1
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 3.4e-39 166.0 167 50.9
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 5.9e-39 165.2 148 52.0
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.9e-39 165.2 149 53.7
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 5.0e-38 162.2 141 56.0
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 5.5e-37 158.7 228 40.8
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.7e-36 156.4 126 55.6
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.7e-36 156.4 153 51.0
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.6e-36 155.6 278 36.7
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.6e-36 155.6 159 51.6
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.1e-34 151.0 229 41.5
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 4.1e-32 142.5 148 49.3
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 4.1e-32 142.5 147 49.7
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 5.3e-32 142.1 97 66.0
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.5e-31 140.6 132 50.8
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.5e-31 140.6 132 51.5
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 9.7e-26 121.3 168 42.3
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 5.3e-24 115.5 148 45.9
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 2.6e-23 113.2 78 64.1
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.1e-20 103.6 131 40.5
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 3.6e-20 102.8 164 40.9
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 2.0e-18 97.1 66 63.6
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 2.6e-18 96.7 59 69.5
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 4.4e-18 95.9 102 50.0
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 5.2e-11 72.4 78 48.7
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 8.2e-09 65.1 154 33.1
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 5.3e-08 62.4 53 50.9


User provided reference genes

Program Settings