Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR188250 Cardamine hirsuta HOM05D001431 ORTHO05D001268 9.4e-71 270.0 130 100.0
AT5G25240 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 3.0e-61 238.4 132 87.9
AL6G36880 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 3.1e-58 228.4 134 82.1
Thhalv10005131m.g Eutrema salsugineum HOM05D001431 ORTHO05D001268 1.6e-54 216.1 128 81.2
Sp2g22300 Schrenkiella parvula HOM05D001431 ORTHO05D001268 6.8e-53 210.7 131 80.9
BcaB04g19797 Brassica carinata HOM05D001431 ORTHO05D001268 5.9e-49 197.6 132 78.0
BcaNung06283 Brassica carinata HOM05D001431 ORTHO05D001268 2.5e-47 192.2 132 76.5
A09p06250 Brassica napus HOM05D001431 ORTHO05D001268 3.3e-47 191.8 132 75.8
C09p06900 Brassica napus HOM05D001431 ORTHO05D001268 3.3e-47 191.8 132 76.5
BraA09t36269Z Brassica rapa HOM05D001431 ORTHO05D001268 3.3e-47 191.8 132 75.8
C02p59750 Brassica napus HOM05D001431 ORTHO05D001268 4.3e-47 191.4 131 73.3
BolC9t53610H Brassica oleracea HOM05D001431 ORTHO05D001268 5.6e-47 191.0 132 76.5
Carub.0006s2305 Capsella rubella HOM05D001431 ORTHO05D001268 9.5e-47 190.3 143 71.3
BolC2t12031H Brassica oleracea HOM05D001431 ORTHO05D001268 1.6e-46 189.5 131 72.5
A02p39860 Brassica napus HOM05D001431 ORTHO05D001268 3.6e-46 188.3 131 72.5
BraA02t08948Z Brassica rapa HOM05D001431 ORTHO05D001268 1.0e-45 186.8 131 71.0
BcaC04g23577 Brassica carinata HOM05D001431 ORTHO05D001268 1.9e-39 166.0 123 74.0
THA.LOC104814117 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 2.5e-31 139.0 120 60.0
Lalb_Chr07g0179511 Lupinus albus HOM05D001431 ORTHO05D001268 1.0e-16 90.5 105 47.6
Duzib168G0286 Durio zibethinus HOM05D001431 ORTHO05D001268 3.9e-16 88.6 133 43.6
Thecc.09G141800 Theobroma cacao HOM05D001431 ORTHO05D001268 3.9e-16 88.6 124 47.6
Gohir.D06G102000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 8.7e-16 87.4 130 45.4
Sabra06G0202700 Salix brachista HOM05D001431 ORTHO05D001268 1.9e-15 86.3 133 42.9
Duzib187G1968 Durio zibethinus HOM05D001431 ORTHO05D001268 4.3e-15 85.1 132 42.4
Gohir.A06G099800 Gossypium hirsutum HOM05D001431 ORTHO05D001268 7.3e-15 84.3 130 44.6
Psat4g033120 Pisum sativum HOM05D001431 ORTHO05D001268 1.3e-14 83.6 116 41.4
arahy.Tifrunner.gnm1.ann1.KMWM4V Arachis hypogaea HOM05D001431 ORTHO05D001268 1.6e-14 83.2 113 46.0
Gorai.010G117000 Gossypium raimondii HOM05D001431 ORTHO05D001268 1.6e-14 83.2 130 43.8
COL.COLO4_18913 Corchorus olitorius HOM05D001431 ORTHO05D001268 2.1e-14 82.8 138 44.9
Potri.006G259300 Populus trichocarpa HOM05D001431 ORTHO05D001268 2.1e-14 82.8 132 41.7
Prupe.1G486100 Prunus persica HOM05D001431 ORTHO05D001268 2.1e-14 82.8 114 45.6
TPR.G15780 Trifolium pratense HOM05D001431 ORTHO05D001268 2.1e-14 82.8 117 40.2
HanXRQChr03g0064021 Helianthus annuus HOM05D001431 ORTHO05D001268 3.6e-14 82.0 103 47.6
Lj6g0025598 Lotus japonicus HOM05D001431 ORTHO05D001268 6.2e-14 81.3 121 41.3
Duzib168G0421 Durio zibethinus HOM05D001431 ORTHO05D001268 1.1e-13 80.5 124 44.4
TAR383G0017 Trochodendron aralioides HOM05D001431 ORTHO05D001268 1.1e-13 80.5 103 47.6
Manes.14G138600 Manihot esculenta HOM05D001431 ORTHO05D001268 1.8e-13 79.7 116 41.4
Hma1.2p1_0949F.1_g240600 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 2.4e-13 79.3 106 43.4
Medtr4g116530 Medicago truncatula HOM05D001431 ORTHO05D001268 2.4e-13 79.3 116 40.5
Glyma.17G105000 Glycine max HOM05D001431 ORTHO05D001268 5.3e-13 78.2 118 44.1
ECA240G3019 Erigeron canadensis HOM05D001431 ORTHO05D001268 6.9e-13 77.8 105 47.6
Hma1.2p1_1784F.1_g302160 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 6.9e-13 77.8 106 42.5
EL10Ac8g18816 Beta vulgaris HOM05D001431 ORTHO05D001268 9.0e-13 77.4 117 37.6
Glyma.15G202100 Glycine max HOM05D001431 ORTHO05D001268 9.0e-13 77.4 118 41.5
TPR.G22802 Trifolium pratense HOM05D001431 ORTHO05D001268 1.2e-12 77.0 121 41.3
Psat0ss25082g0080 Pisum sativum HOM05D001431 ORTHO05D001268 1.5e-12 76.6 104 44.2
Cpa.g.sc187.26 Carica papaya HOM05D001431 ORTHO05D001268 2.0e-12 76.3 113 42.5
CSS0009490 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 2.6e-12 75.9 106 45.3
Duzib187G1758 Durio zibethinus HOM05D001431 ORTHO05D001268 2.6e-12 75.9 108 45.4
Sed0026439 Sechium edule HOM05D001431 ORTHO05D001268 4.4e-12 75.1 131 39.7
VMungo1215G3003 Vigna mungo HOM05D001431 ORTHO05D001268 4.4e-12 75.1 130 39.2
AUR62011255 Chenopodium quinoa HOM05D001431 ORTHO05D001268 5.8e-12 74.7 137 34.3
AUR62041452 Chenopodium quinoa HOM05D001431 ORTHO05D001268 5.8e-12 74.7 135 35.6
MELO3C010262.2 Cucumis melo HOM05D001431 ORTHO05D001268 5.8e-12 74.7 113 43.4
Rhsim03G0254500 Rhododendron simsii HOM05D001431 ORTHO05D001268 7.6e-12 74.3 111 39.6
TWI34G1362 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 7.6e-12 74.3 107 42.1
ClCG06G012050 Citrullus lanatus HOM05D001431 ORTHO05D001268 9.9e-12 73.9 110 44.5
CsaV3_1G028510 Cucumis sativus L. HOM05D001431 ORTHO05D001268 9.9e-12 73.9 122 41.0
Glyma.09G095800 Glycine max HOM05D001431 ORTHO05D001268 9.9e-12 73.9 126 42.1
Glyma.13G157400 Glycine max HOM05D001431 ORTHO05D001268 9.9e-12 73.9 125 41.6
Ca_27061_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 1.3e-11 73.6 105 41.0
Lalb_Chr11g0072871 Lupinus albus HOM05D001431 ORTHO05D001268 2.2e-11 72.8 123 40.7
MD15G1130700 Malus domestica HOM05D001431 ORTHO05D001268 2.2e-11 72.8 74 55.4
Manes.16G126000 Manihot esculenta HOM05D001431 ORTHO05D001268 2.2e-11 72.8 128 41.4
Peaxi162Scf00391g00002 Petunia axillaris HOM05D001431 ORTHO05D001268 2.2e-11 72.8 105 39.0
TAR626G1912 Trochodendron aralioides HOM05D001431 ORTHO05D001268 2.2e-11 72.8 103 43.7
Medtr2g461190 Medicago truncatula HOM05D001431 ORTHO05D001268 2.9e-11 72.4 116 40.5
Phvul.003G174800 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 2.9e-11 72.4 93 46.2
VMungo1309G2763 Vigna mungo HOM05D001431 ORTHO05D001268 2.9e-11 72.4 130 38.5
QL02p091314 Quercus lobata HOM05D001431 ORTHO05D001268 3.8e-11 72.0 109 40.4
Lsat_1_v5_gn_7_47921 Lactuca sativa HOM05D001431 ORTHO05D001268 8.4e-11 70.9 126 39.7
Nn8g39717 Nelumbo nucifera HOM05D001431 ORTHO05D001268 8.4e-11 70.9 116 43.1
Oeu042713.1 Olea europaea HOM05D001431 ORTHO05D001268 8.4e-11 70.9 120 37.5
Ciclev10010491m.g Citrus clementina HOM05D001431 ORTHO05D001268 1.1e-10 70.5 123 42.3
COL.COLO4_24101 Corchorus olitorius HOM05D001431 ORTHO05D001268 1.1e-10 70.5 104 41.3
Manes.03G011900 Manihot esculenta HOM05D001431 ORTHO05D001268 1.1e-10 70.5 130 38.5
MBI15_g10642_MAGBIO Magnolia biondii HOM05D001431 ORTHO05D001268 1.4e-10 70.1 135 37.0
Migut.K00377 Erythranthe guttata HOM05D001431 ORTHO05D001268 3.2e-10 68.9 121 40.5
Lsat_1_v5_gn_8_63180 Lactuca sativa HOM05D001431 ORTHO05D001268 7.1e-10 67.8 102 42.2
CiPaw.07G227000 Carya illinoinensis HOM05D001431 ORTHO05D001268 9.3e-10 67.4 114 39.5
Eucgr.C02729 Eucalyptus grandis HOM05D001431 ORTHO05D001268 9.3e-10 67.4 105 42.9
Gohir.A06G050000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 9.3e-10 67.4 117 41.0
Nitab4.5_0011752g0010 Nicotiana tabacum HOM05D001431 ORTHO05D001268 1.6e-09 66.6 128 36.7
Phvul.009G209600 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 2.1e-09 66.2 115 37.4
Sabra18G0097100 Salix brachista HOM05D001431 ORTHO05D001268 2.1e-09 66.2 121 39.7
Ah.09g223880 Amaranthus hybridus HOM05D001431 ORTHO05D001268 2.7e-09 65.9 101 39.6
Cfa020891 Carpinus fangiana HOM05D001431 ORTHO05D001268 2.7e-09 65.9 124 37.9
Eucgr.C02728 Eucalyptus grandis HOM05D001431 ORTHO05D001268 2.7e-09 65.9 105 41.9
PGSC0003DMG400030698 Solanum tuberosum HOM05D001431 ORTHO05D001268 2.7e-09 65.9 109 39.4
CANSAT11G0265 Cannabis sativa HOM05D001431 ORTHO05D001268 3.5e-09 65.5 73 46.6
Gorai.010G056200 Gossypium raimondii HOM05D001431 ORTHO05D001268 3.5e-09 65.5 115 40.9
QL02p091271 Quercus lobata HOM05D001431 ORTHO05D001268 3.5e-09 65.5 127 40.9
Actinidia14101 Actinidia chinensis HOM05D001431 ORTHO05D001268 6.0e-09 64.7 68 51.5
Sed0005869 Sechium edule HOM05D001431 ORTHO05D001268 6.0e-09 64.7 117 41.0
Migut.K00665 Erythranthe guttata HOM05D001431 ORTHO05D001268 7.8e-09 64.3 116 40.5
HanXRQChr06g0181721 Helianthus annuus HOM05D001431 ORTHO05D001268 7.8e-09 64.3 72 47.2
RcHm_v2.0_Chr2g0086671 Rosa chinensis HOM05D001431 ORTHO05D001268 7.8e-09 64.3 133 32.3
Hma1.2p1_0182F.1_g080500 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 1.0e-08 63.9 118 36.4
Solyc07g007130.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 1.0e-08 63.9 107 37.4
DCAR_020906 Daucus carota HOM05D001431 ORTHO05D001268 1.3e-08 63.5 68 48.5
Potri.018G114200 Populus trichocarpa HOM05D001431 ORTHO05D001268 1.3e-08 63.5 107 40.2
Haze_21462 Corylus avellana HOM05D024967 ORTHO05D001268 1.7e-08 63.2 132 38.6
Cfa007450 Carpinus fangiana HOM05D001431 ORTHO05D001268 2.3e-08 62.8 97 37.1
Haze_21471 Corylus avellana HOM05D024967 ORTHO05D001268 2.3e-08 62.8 132 39.4
Potri.006G190100 Populus trichocarpa HOM05D001431 ORTHO05D001268 2.3e-08 62.8 102 41.2
Migut.K00653 Erythranthe guttata HOM05D001431 ORTHO05D001268 3.0e-08 62.4 116 39.7
FvH4_2g28310 Fragaria vesca HOM05D001431 ORTHO05D001268 3.0e-08 62.4 95 43.2
FAN27G3025 Fragaria x ananassa HOM05D001431 ORTHO05D001268 3.0e-08 62.4 104 40.4
HanXRQChr05g0137941 Helianthus annuus HOM05D001431 ORTHO05D001268 3.0e-08 62.4 62 53.2
Cc06_g07420 Coffea canephora HOM05D001431 ORTHO05D001268 5.1e-08 61.6 84 41.7
SGA_v2.0_scaffold224G42972 Striga asiatica HOM05D001431 ORTHO05D001268 5.1e-08 61.6 105 38.1
Atru.chr7.2499 Acer truncatum HOM05D001431 ORTHO05D001268 6.6e-08 61.2 115 35.7
Sopen07g003180 Solanum pennellii HOM05D001431 ORTHO05D001268 6.6e-08 61.2 107 36.4
Ah.14g078760 Amaranthus hybridus HOM05D001431 ORTHO05D001268 8.7e-08 60.8 65 47.7
MSTRG.6092 Avicennia marina HOM05D001431 ORTHO05D001268 8.7e-08 60.8 117 38.5
FAN02G3568 Fragaria x ananassa HOM05D001431 ORTHO05D001268 8.7e-08 60.8 99 41.4
FAN05G1435 Fragaria x ananassa HOM05D001431 ORTHO05D001268 8.7e-08 60.8 99 41.4
CDE10G0322 Ceratophyllum demersum HOM05D000154 ORTHO05D000092 1.1e-07 60.5 80 42.5
AUR62008241 Chenopodium quinoa HOM05D001431 ORTHO05D001268 1.1e-07 60.5 58 56.9
AUR62030993 Chenopodium quinoa HOM05D001431 ORTHO05D001268 1.1e-07 60.5 58 56.9
ECA236G0145 Erigeron canadensis HOM05D001431 ORTHO05D001268 1.1e-07 60.5 72 44.4
Ciclev10010338m.g Citrus clementina HOM05D001431 ORTHO05D001268 1.5e-07 60.1 80 41.2
FAN09G1609 Fragaria x ananassa HOM05D001431 ORTHO05D001268 1.5e-07 60.1 99 41.4
FAN20G3221 Fragaria x ananassa HOM05D001431 ORTHO05D001268 1.5e-07 60.1 95 41.1
Lju41C33T14 Lonicera japonica HOM05D001431 ORTHO05D001268 1.5e-07 60.1 89 41.6
RcHm_v2.0_Chr6g0297221 Rosa chinensis HOM05D001431 ORTHO05D001268 1.5e-07 60.1 61 52.5
CDE10G0680 Ceratophyllum demersum HOM05D001431 ORTHO05D001268 1.9e-07 59.7 79 43.0
FvH4_1g01721 Fragaria vesca HOM05D001431 ORTHO05D001268 1.9e-07 59.7 137 30.7
FAN19G1266 Fragaria x ananassa HOM05D001431 ORTHO05D001268 1.9e-07 59.7 137 30.7
MSTRG.26316 Avicennia marina HOM05D001431 ORTHO05D001268 2.5e-07 59.3 124 36.3
CiPaw.15G181700 Carya illinoinensis HOM05D001431 ORTHO05D001268 2.5e-07 59.3 112 33.0
CANSAT64G0073 Cannabis sativa HOM05D001431 ORTHO05D001268 3.3e-07 58.9 112 35.7
Migut.H00140 Erythranthe guttata HOM05D001431 ORTHO05D001268 3.3e-07 58.9 108 42.6
Migut.K01365 Erythranthe guttata HOM05D001431 ORTHO05D001268 4.3e-07 58.5 118 39.8
Eucgr.C00435 Eucalyptus grandis HOM05D001431 ORTHO05D001268 4.3e-07 58.5 106 34.0
Actinidia26350 Actinidia chinensis HOM05D000320 ORTHO05D000532 5.6e-07 58.2 67 49.3
Atru.chr7.261 Acer truncatum HOM05D001431 ORTHO05D001268 7.3e-07 57.8 118 33.1
FvH4_6g50470 Fragaria vesca HOM05D001431 ORTHO05D001268 7.3e-07 57.8 99 40.4
FAN05G5795 Fragaria x ananassa HOM05D001431 ORTHO05D001268 7.3e-07 57.8 99 40.4
FAN14G2501 Fragaria x ananassa HOM05D001431 ORTHO05D001268 7.3e-07 57.8 99 40.4
MD09G1036100 Malus domestica HOM05D001431 ORTHO05D001268 7.3e-07 57.8 55 52.7
Nitab4.5_0007803g0040 Nicotiana tabacum HOM05D001431 ORTHO05D001268 7.3e-07 57.8 68 51.5
Potri.015G073800 Populus trichocarpa HOM05D001431 ORTHO05D001268 7.3e-07 57.8 58 55.2
CAN.G628.72 Capsicum annuum HOM05D001431 ORTHO05D001268 9.6e-07 57.4 66 48.5
CsaV3_5G037310 Cucumis sativus L. HOM05D001431 ORTHO05D001268 9.6e-07 57.4 112 33.9
Sabra15G0097900 Salix brachista HOM05D001431 ORTHO05D001268 9.6e-07 57.4 66 50.0
CSS0036833 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 1.3e-06 57.0 73 42.5
COL.COLO4_04371 Corchorus olitorius HOM05D001431 ORTHO05D001268 1.3e-06 57.0 85 40.0
Lalb_Chr06g0176361 Lupinus albus HOM05D001431 ORTHO05D001268 1.3e-06 57.0 66 45.5
Nitab4.5_0007879g0040 Nicotiana tabacum HOM05D001431 ORTHO05D001268 1.3e-06 57.0 70 45.7
Prupe.3G281600 Prunus persica HOM05D001431 ORTHO05D001268 1.3e-06 57.0 75 45.3
Sed0006170 Sechium edule HOM05D001431 ORTHO05D001268 1.3e-06 57.0 132 36.4
PGSC0003DMG400026998 Solanum tuberosum HOM05D001431 ORTHO05D001268 1.3e-06 57.0 68 51.5
CAN.G518.20 Capsicum annuum HOM05D001431 ORTHO05D001268 1.6e-06 56.6 80 46.2
HanXRQChr09g0272321 Helianthus annuus HOM05D001431 ORTHO05D001268 1.6e-06 56.6 87 42.5
Hma1.2p1_0701F.1_g205980 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 1.6e-06 56.6 59 45.8
PGR142G0349 Punica granatum HOM05D001431 ORTHO05D001268 1.6e-06 56.6 135 34.1
Sc18g0000050 Simmondsia chinensis HOM05D001431 ORTHO05D001268 1.6e-06 56.6 129 30.2
SGA_v2.0_scaffold30G12483 Striga asiatica HOM05D001431 ORTHO05D001268 1.6e-06 56.6 110 40.0
Solyc06g071370.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 2.1e-06 56.2 68 51.5
Sopen06g027650 Solanum pennellii HOM05D001431 ORTHO05D001268 2.1e-06 56.2 68 51.5
EL10Ac5g10788 Beta vulgaris HOM05D001431 ORTHO05D001268 2.8e-06 55.8 72 51.4
Nitab4.5_0001952g0050 Nicotiana tabacum HOM05D001431 ORTHO05D001268 2.8e-06 55.8 70 44.3
Oeu047316.1 Olea europaea HOM05D001431 ORTHO05D001268 2.8e-06 55.8 122 36.1
TPR.G37484 Trifolium pratense HOM05D001431 ORTHO05D001268 2.8e-06 55.8 66 43.9
VMungo1215G3018 Vigna mungo HOM05D001431 ORTHO05D001268 2.8e-06 55.8 70 41.4
ClCG08G013540 Citrullus lanatus HOM05D001431 ORTHO05D001268 3.6e-06 55.5 114 36.8
SalBow1G2113 Salvia bowleyana HOM05D001431 ORTHO05D001268 3.6e-06 55.5 106 37.7
CAN.G206.43 Capsicum annuum HOM05D001431 ORTHO05D001268 4.8e-06 55.1 109 37.6
Duzib147G0546 Durio zibethinus HOM05D001431 ORTHO05D001268 4.8e-06 55.1 57 50.9
Lsat_1_v5_gn_0_5740 Lactuca sativa HOM05D001431 ORTHO05D001268 4.8e-06 55.1 76 44.7
Psat4g057080 Pisum sativum HOM05D001431 ORTHO05D001268 4.8e-06 55.1 66 43.9
Sed0025664 Sechium edule HOM05D001431 ORTHO05D001268 4.8e-06 55.1 66 45.5
Ah.02g110420 Amaranthus hybridus HOM05D001431 ORTHO05D001268 6.2e-06 54.7 93 36.6
Cfa019090 Carpinus fangiana HOM05D001431 ORTHO05D001268 6.2e-06 54.7 71 45.1
CiPaw.04G023800 Carya illinoinensis HOM05D001431 ORTHO05D001268 6.2e-06 54.7 97 34.0
Haze_19319 Corylus avellana HOM05D001431 ORTHO05D001268 6.2e-06 54.7 136 33.8
MELO3C021529.2 Cucumis melo HOM05D001431 ORTHO05D001268 6.2e-06 54.7 83 41.0
HanXRQChr02g0037191 Helianthus annuus HOM05D001431 ORTHO05D001268 6.2e-06 54.7 54 51.9
TAR622G1254 Trochodendron aralioides HOM05D001431 ORTHO05D001268 6.2e-06 54.7 82 42.7
ClCG09G018820 Citrullus lanatus HOM05D001431 ORTHO05D001268 8.1e-06 54.3 71 42.3
MELO3C011280.2 Cucumis melo HOM05D001431 ORTHO05D001268 8.1e-06 54.3 106 37.7
Lalb_Chr13g0297891 Lupinus albus HOM05D001431 ORTHO05D001268 8.1e-06 54.3 61 45.9
Medtr4g106650 Medicago truncatula HOM05D001431 ORTHO05D001268 8.1e-06 54.3 65 46.2
Nitab4.5_0000003g0460 Nicotiana tabacum HOM05D001431 ORTHO05D001268 8.1e-06 54.3 54 53.7
Oeu054677.1 Olea europaea HOM05D001431 ORTHO05D001268 8.1e-06 54.3 114 34.2


User provided reference genes

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