Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.9e-242 842.0 419 100.0
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 2.0e-207 725.7 422 86.3
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 2.2e-206 722.2 422 85.8
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 2.9e-206 721.8 423 86.3
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 1.8e-200 702.6 422 84.6
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 1.5e-197 693.0 416 83.4
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 4.9e-177 624.8 420 76.2
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 2.4e-176 622.5 420 76.0
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 2.2e-169 599.4 429 73.2
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 2.3e-166 589.3 405 75.8
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 2.5e-165 585.9 405 76.0
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 2.3e-163 579.3 405 74.3
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 4.0e-163 578.6 405 74.6
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 9.2e-152 540.8 424 64.9
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 9.0e-139 497.7 314 80.3
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 6.4e-121 438.3 400 56.0
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 1.3e-118 430.6 412 54.9
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 3.0e-118 429.5 400 56.0
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 6.7e-118 428.3 400 56.2
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 3.3e-117 426.0 404 55.9
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 2.1e-116 423.3 401 53.6
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 4.0e-115 419.1 400 55.0
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 4.0e-115 419.1 421 53.0
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 3.4e-114 416.0 412 53.4
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 7.6e-114 414.8 419 52.5
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.7e-113 413.7 412 53.2
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 2.9e-113 412.9 399 54.1
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 3.8e-113 412.5 392 54.1
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 1.4e-112 410.6 401 53.6
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.9e-112 410.2 419 52.7
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.5e-112 409.8 399 53.1
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 5.5e-112 408.7 423 50.4
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 9.3e-112 407.9 399 52.9
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.2e-111 407.5 425 50.4
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.5e-111 406.0 390 53.1
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.3e-110 404.1 399 52.9
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 3.0e-110 402.9 400 52.5
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 3.9e-110 402.5 406 49.8
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 3.9e-110 402.5 398 52.8
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.9e-109 400.2 396 52.8
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.6e-108 397.1 399 52.1
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 4.8e-108 395.6 376 56.1
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 6.3e-108 395.2 400 51.0
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 1.1e-107 394.4 414 48.8
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 3.1e-107 392.9 394 54.1
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 5.3e-107 392.1 392 52.3
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 2.0e-106 390.2 397 51.6
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 3.4e-106 389.4 419 48.9
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 4.5e-106 389.0 383 50.9
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 4.5e-106 389.0 394 51.8
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 5.0e-105 385.6 392 51.8
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.1e-104 384.4 424 47.2
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 9.3e-104 381.3 399 50.4
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 2.7e-103 379.8 390 50.3
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 7.9e-103 378.3 399 49.6
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 7.9e-103 378.3 420 48.3
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 2.3e-102 376.7 421 48.0
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 2.3e-102 376.7 402 49.8
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 3.9e-102 375.9 365 54.8
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 5.1e-102 375.6 393 49.6
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.7e-102 374.8 398 49.7
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 1.5e-101 374.0 390 49.5
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 4.3e-101 372.5 405 49.1
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 4.3e-101 372.5 397 49.9
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 4.3e-101 372.5 427 46.6
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 1.3e-100 370.9 406 48.3
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 1.7e-100 370.5 426 47.7
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 8.2e-100 368.2 374 50.3
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-99 367.5 385 50.4
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 1.4e-99 367.5 414 48.3
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 3.1e-99 366.3 417 49.2
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 9.1e-99 364.8 426 46.9
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 1.0e-97 361.3 395 46.3
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 1.0e-97 361.3 398 49.5
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 2.2e-97 360.1 422 46.7
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 6.5e-97 358.6 393 50.1
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 6.5e-97 358.6 391 47.6
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 7.2e-96 355.1 383 48.8
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 1.6e-95 354.0 382 49.7
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 4.7e-95 352.4 408 47.3
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 7.9e-95 351.7 397 48.4
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.1e-93 347.8 369 51.8
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 3.3e-93 346.3 419 45.6
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 4.4e-93 345.9 369 51.2
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 9.7e-93 344.7 405 45.9
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 2.8e-92 343.2 368 51.4
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 6.3e-92 342.0 413 45.5
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.4e-91 340.9 379 48.3
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 4.1e-91 339.3 365 51.5
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 1.5e-90 337.4 396 45.7
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 6.5e-89 332.0 362 50.6
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.4e-88 330.9 357 51.3
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 2.1e-87 327.0 395 45.1
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 2.0e-85 320.5 388 45.1
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 2.9e-81 306.6 365 47.4
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 1.1e-80 304.7 397 43.6
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 1.1e-80 304.7 397 41.6
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 4.0e-78 296.2 180 81.7
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 6.7e-78 295.4 398 43.0
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 8.8e-78 295.0 391 43.0
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 1.2e-77 294.7 383 43.6
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.0e-77 293.9 321 49.8
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 1.8e-75 287.3 291 52.2
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 3.0e-70 270.0 318 51.6
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 1.6e-66 257.7 297 46.8
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.9e-62 241.9 274 50.0
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 1.2e-58 231.5 311 41.8
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 1.1e-56 224.9 238 47.1
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 1.9e-56 224.2 406 33.5
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 4.3e-56 223.0 244 48.0
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 2.8e-55 220.3 176 61.9
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 4.7e-55 219.5 219 51.6
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 2.3e-54 217.2 287 41.5
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 2.3e-54 217.2 198 52.5
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 1.5e-53 214.5 177 66.7
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 2.6e-53 213.8 371 38.0
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 9.8e-53 211.8 258 45.7
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 1.3e-52 211.5 211 53.1
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 6.6e-49 199.1 377 35.3
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.9e-46 188.7 162 56.2
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 2.6e-37 160.6 189 43.9
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.9e-36 157.1 318 34.0
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 3.2e-35 153.7 198 46.0
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 3.2e-35 153.7 177 43.5
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 1.3e-33 148.3 180 42.8
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.3e-32 143.7 278 34.9
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.3e-32 143.3 140 52.9
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 2.6e-29 134.0 172 44.8
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 1.6e-26 124.8 220 39.5
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 1.0e-25 122.1 102 56.9
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.0e-22 109.0 114 52.6
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.4e-20 102.8 110 49.1
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.4e-20 102.4 115 50.4
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.4e-19 100.9 110 47.3
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.8e-15 86.7 103 47.6
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.1e-14 84.0 84 50.0
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 1.1e-11 75.5 82 43.9
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.0e-09 67.4 48 64.6
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 5.6e-08 63.2 83 41.0


User provided reference genes

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