Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 1.2e-44 183.0 100 100.0
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 1.7e-40 169.1 100 92.0
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 2.3e-40 168.7 100 92.0
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 1.1e-39 166.4 96 94.8
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 1.2e-38 162.9 100 89.0
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 4.7e-38 161.0 96 90.6
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 9.2e-34 146.7 96 86.5
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 9.2e-34 146.7 96 86.5
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 3.5e-33 144.8 96 85.4
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 4.6e-33 144.4 96 84.4
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 3.1e-29 131.7 96 76.0
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 5.8e-28 127.5 127 63.8
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 4.9e-27 124.4 125 64.8
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 1.3e-24 116.3 97 64.9
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 5.6e-23 110.9 96 62.5
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 2.1e-22 109.0 96 62.5
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 4.8e-22 107.8 96 64.6
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 8.1e-22 107.1 96 62.5
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 3.1e-21 105.1 96 60.4
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 3.1e-21 105.1 97 61.9
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 4.0e-21 104.8 96 60.4
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 9.0e-21 103.6 96 62.5
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.5e-20 102.8 99 60.6
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 1.5e-20 102.8 99 60.6
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 5.8e-20 100.9 96 59.4
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 7.6e-20 100.5 95 57.9
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 1.3e-19 99.8 99 59.6
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 1.3e-19 99.8 96 60.4
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 1.7e-19 99.4 96 59.4
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 2.9e-19 98.6 93 60.2
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 6.4e-19 97.4 82 61.0
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 6.4e-19 97.4 97 58.8
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 8.4e-19 97.1 97 58.8
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 2.4e-18 95.5 95 54.7
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 3.2e-18 95.1 99 54.5
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 4.2e-18 94.7 101 56.4
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 9.3e-18 93.6 96 59.4
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 1.6e-17 92.8 101 53.5
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 2.1e-17 92.4 93 59.1
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 2.7e-17 92.0 76 57.9
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 2.7e-17 92.0 80 60.0
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 4.6e-17 91.3 95 54.7
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 7.9e-17 90.5 96 56.2
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 1.0e-16 90.1 99 48.5
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 1.0e-16 90.1 98 56.1
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 1.8e-16 89.4 101 51.5
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 2.3e-16 89.0 94 54.3
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 3.0e-16 88.6 94 54.3
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 3.9e-16 88.2 76 56.6
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 5.1e-16 87.8 95 47.4
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 8.7e-16 87.0 76 55.3
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 1.1e-15 86.7 80 53.8
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 1.5e-15 86.3 92 55.4
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 1.9e-15 85.9 65 66.2
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 1.9e-15 85.9 77 59.7
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 2.5e-15 85.5 67 64.2
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 5.6e-15 84.3 80 56.2
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 7.4e-15 84.0 96 52.1
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 7.4e-15 84.0 96 47.9
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 9.6e-15 83.6 78 59.0
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 9.6e-15 83.6 96 51.0
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 1.3e-14 83.2 74 54.1
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.6e-14 82.8 124 46.0
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 1.6e-14 82.8 102 52.0
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 2.1e-14 82.4 77 57.1
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 2.1e-14 82.4 77 57.1
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 2.8e-14 82.0 71 59.2
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 4.8e-14 81.3 64 64.1
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 4.8e-14 81.3 66 63.6
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 4.8e-14 81.3 66 63.6
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 6.2e-14 80.9 79 54.4
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 1.1e-13 80.1 75 58.7
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 1.8e-13 79.3 77 49.4
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 4.0e-13 78.2 65 63.1
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 6.9e-13 77.4 97 44.3
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 1.2e-12 76.6 101 48.5
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 2.0e-12 75.9 99 41.4
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 2.6e-12 75.5 87 42.5
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 7.6e-12 73.9 62 59.7
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 2.2e-11 72.4 75 50.7
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 3.8e-11 71.6 56 62.5
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 6.5e-11 70.9 72 56.9
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.4e-10 69.7 57 63.2
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 2.5e-10 68.9 88 48.9
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 4.2e-10 68.2 97 41.2
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 5.5e-10 67.8 104 42.3
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 1.2e-09 66.6 50 64.0
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 1.3e-08 63.2 97 40.2
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.3e-08 63.2 110 43.6
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 9.6e-07 57.0 52 59.6
Zm00001eb283780 Zea mays HOM05D025088 ORTHO05D009668 3.7e-06 55.1 70 42.9
Actinidia14648 Actinidia chinensis HOM05D007649 ORTHO05D009668 6.2e-06 54.3 62 51.6


User provided reference genes

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