Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR186730 Cardamine hirsuta HOM05D010839 ORTHO05D012555 1.1e-86 323.2 155 100.0
CARHR186740 Cardamine hirsuta HOM05D010839 ORTHO05D012555 7.3e-62 240.7 157 73.9
Carub.0006s2446 Capsella rubella HOM05D010839 ORTHO05D012555 5.6e-46 188.0 155 60.6
CARHR107860 Cardamine hirsuta HOM05D010839 ORTHO05D012555 3.1e-44 182.2 157 59.9
AL6G38680 Arabidopsis lyrata HOM05D010839 ORTHO05D012555 4.0e-44 181.8 155 60.6
AT5G26805 Arabidopsis thaliana HOM05D010839 ORTHO05D012555 2.4e-41 172.6 154 58.4
Thhalv10005695m.g Eutrema salsugineum HOM05D010839 ORTHO05D012555 3.9e-39 165.2 155 53.5
Sp2g21190 Schrenkiella parvula HOM05D010839 ORTHO05D012555 1.5e-35 153.3 155 51.6
BcaC03g17831 Brassica carinata HOM05D010839 ORTHO05D012555 9.3e-33 144.1 156 47.4
C02p58600 Brassica napus HOM05D010839 ORTHO05D012555 9.3e-33 144.1 156 47.4
BolC2t11921H Brassica oleracea HOM05D010839 ORTHO05D012555 9.3e-33 144.1 156 47.4
BcaNung06219 Brassica carinata HOM05D010839 ORTHO05D012555 4.6e-32 141.7 155 47.1
BraA02t08871Z Brassica rapa HOM05D010839 ORTHO05D012555 6.0e-32 141.4 156 47.4
A02p39010 Brassica napus HOM05D010839 ORTHO05D012555 1.8e-31 139.8 156 46.8
Aa31LG11G9830 Aethionema arabicum HOM05D010839 ORTHO05D012555 5.8e-19 98.2 157 40.8
THA.LOC104821741 Tarenaya hassleriana HOM05D010839 ORTHO05D012555 4.2e-17 92.0 159 35.8
CARHR058520 Cardamine hirsuta HOM05D010839 ORTHO05D012555 5.5e-17 91.7 57 73.7
Aa31LG11G9840 Aethionema arabicum HOM05D010839 ORTHO05D012555 2.1e-16 89.7 136 36.0
CSS0035206 Camellia sinensis var. sinensis HOM05D001713 ORTHO05D001669 1.0e-15 87.4 162 35.8
Aa31sc443G10 Aethionema arabicum HOM05D010839 ORTHO05D012555 1.8e-15 86.7 157 36.9
Nn4g25547 Nelumbo nucifera HOM05D001713 ORTHO05D001669 2.8e-13 79.3 162 35.2
Lalb_Chr15g0085411 Lupinus albus HOM05D001713 ORTHO05D001669 3.7e-13 79.0 114 38.6
Lalb_Chr25g0283031 Lupinus albus HOM05D001713 ORTHO05D001669 6.3e-13 78.2 114 36.8
Carub.0002s2549 Capsella rubella HOM05D001713 ORTHO05D001669 1.4e-12 77.0 126 34.1
QL02p102432 Quercus lobata HOM05D001713 ORTHO05D001669 1.2e-11 73.9 114 34.2
Lalb_Chr09g0330831 Lupinus albus HOM05D001713 ORTHO05D001669 1.5e-11 73.6 114 36.0
Rhsim07G0090600 Rhododendron simsii HOM05D001713 ORTHO05D001669 1.5e-11 73.6 115 36.5
QL02p102444 Quercus lobata HOM05D001713 ORTHO05D001669 2.0e-11 73.2 114 33.3
QL02p103065 Quercus lobata HOM05D001713 ORTHO05D001669 2.0e-11 73.2 114 33.3
QL02p103081 Quercus lobata HOM05D001713 ORTHO05D001669 2.0e-11 73.2 114 33.3
Thecc.01G156600 Theobroma cacao HOM05D001713 ORTHO05D001669 2.6e-11 72.8 113 37.2
Psat1g027960 Pisum sativum HOM05D001713 ORTHO05D001669 5.9e-11 71.6 114 35.1
Gohir.D09G186450 Gossypium hirsutum HOM05D001713 ORTHO05D001669 7.7e-11 71.2 124 37.9
Gorai.006G209200 Gossypium raimondii HOM05D001713 ORTHO05D001669 7.7e-11 71.2 124 37.9
TPR.G39275 Trifolium pratense HOM05D001713 ORTHO05D001669 7.7e-11 71.2 114 35.1
Lalb_Chr09g0330841 Lupinus albus HOM05D001713 ORTHO05D001669 1.3e-10 70.5 113 32.7
Medtr2g058520 Medicago truncatula HOM05D001713 ORTHO05D001669 1.3e-10 70.5 114 34.2
Phvul.009G204600 Phaseolus vulgaris HOM05D001713 ORTHO05D001669 2.2e-10 69.7 113 32.7
Rhsim07G0090800 Rhododendron simsii HOM05D001713 ORTHO05D001669 2.2e-10 69.7 130 33.8
Cfa012228 Carpinus fangiana HOM05D001713 ORTHO05D001669 2.9e-10 69.3 114 37.7
Gohir.A09G192201 Gossypium hirsutum HOM05D001713 ORTHO05D001669 2.9e-10 69.3 124 37.1
Rhsim07G0090700 Rhododendron simsii HOM05D001713 ORTHO05D001669 2.9e-10 69.3 144 29.2
Glyma.04G156400 Glycine max HOM05D001713 ORTHO05D001669 3.8e-10 68.9 152 28.3
Gohir.A10G046150 Gossypium hirsutum HOM05D001713 ORTHO05D001669 3.8e-10 68.9 113 35.4
QL12p032723 Quercus lobata HOM05D001713 ORTHO05D001669 3.8e-10 68.9 114 31.6
Eucgr.E02045 Eucalyptus grandis HOM05D001713 ORTHO05D001669 5.0e-10 68.6 125 33.6
Glyma.08G327600 Glycine max HOM05D001713 ORTHO05D001669 6.5e-10 68.2 113 35.4
Glyma.08G327800 Glycine max HOM05D001713 ORTHO05D001669 6.5e-10 68.2 113 35.4
Lj6g0004027 Lotus japonicus HOM05D001713 ORTHO05D001669 6.5e-10 68.2 114 34.2
arahy.Tifrunner.gnm1.ann1.GE1X0Z Arachis hypogaea HOM05D001713 ORTHO05D001669 8.5e-10 67.8 110 34.5
Glyma.10G103500 Glycine max HOM05D001713 ORTHO05D001669 8.5e-10 67.8 113 33.6
Gorai.011G050500 Gossypium raimondii HOM05D001713 ORTHO05D001669 8.5e-10 67.8 113 35.4
Lj3g0017442 Lotus japonicus HOM05D001713 ORTHO05D001669 8.5e-10 67.8 112 28.6
CiPaw.04G131800 Carya illinoinensis HOM05D001713 ORTHO05D001669 1.1e-09 67.4 124 35.5
Manes.18G142300 Manihot esculenta HOM05D001713 ORTHO05D001669 1.1e-09 67.4 114 32.5
Manes.18G142350 Manihot esculenta HOM05D001713 ORTHO05D001669 1.1e-09 67.4 114 32.5
PGR031G3325 Punica granatum HOM05D001713 ORTHO05D001669 1.1e-09 67.4 114 35.1
Haze_08774 Corylus avellana HOM05D001713 ORTHO05D001669 1.4e-09 67.0 113 36.3
Eucgr.E02050 Eucalyptus grandis HOM05D001713 ORTHO05D001669 1.9e-09 66.6 113 34.5
Eucgr.L03694 Eucalyptus grandis HOM05D001713 ORTHO05D001669 1.9e-09 66.6 113 34.5
Manes.18G110600 Manihot esculenta HOM05D001713 ORTHO05D001669 1.9e-09 66.6 117 36.8
Manes.18G142304 Manihot esculenta HOM05D001713 ORTHO05D001669 1.9e-09 66.6 114 32.5
Thecc.08G154200 Theobroma cacao HOM05D001713 ORTHO05D001669 1.9e-09 66.6 113 35.4
Manes.18G110675 Manihot esculenta HOM05D001713 ORTHO05D001669 2.5e-09 66.2 117 36.8
arahy.Tifrunner.gnm1.ann1.PE7EYC Arachis hypogaea HOM05D001713 ORTHO05D001669 3.2e-09 65.9 109 32.1
CiPaw.04G131900 Carya illinoinensis HOM05D001713 ORTHO05D001669 3.2e-09 65.9 124 35.5
Eucgr.E02046 Eucalyptus grandis HOM05D001713 ORTHO05D001669 3.2e-09 65.9 113 31.9
Eucgr.E04371 Eucalyptus grandis HOM05D001713 ORTHO05D001669 3.2e-09 65.9 112 31.2
Eucgr.E04373 Eucalyptus grandis HOM05D001713 ORTHO05D001669 3.2e-09 65.9 112 31.2
Eucgr.L02104 Eucalyptus grandis HOM05D001713 ORTHO05D001669 3.2e-09 65.9 113 31.0
Eucgr.E02047 Eucalyptus grandis HOM05D001713 ORTHO05D001669 4.2e-09 65.5 119 32.8
Eucgr.L01802 Eucalyptus grandis HOM05D001713 ORTHO05D001669 4.2e-09 65.5 125 32.0
Sabra03G0141500 Salix brachista HOM05D001713 ORTHO05D001669 4.2e-09 65.5 116 29.3
Sabra03G0141700 Salix brachista HOM05D001713 ORTHO05D001669 4.2e-09 65.5 116 29.3
Sabra03G0141900 Salix brachista HOM05D001713 ORTHO05D001669 4.2e-09 65.5 116 29.3
Sabra03G0142100 Salix brachista HOM05D001713 ORTHO05D001669 4.2e-09 65.5 116 29.3
Sabra03G0142300 Salix brachista HOM05D001713 ORTHO05D001669 4.2e-09 65.5 116 29.3
Sabra03G0142500 Salix brachista HOM05D001713 ORTHO05D001669 4.2e-09 65.5 116 29.3
Sabra03G0142700 Salix brachista HOM05D001713 ORTHO05D001669 4.2e-09 65.5 116 29.3
Sabra03G0142800 Salix brachista HOM05D001713 ORTHO05D001669 4.2e-09 65.5 116 29.3
TWI34G0085 Tripterygium wilfordii HOM05D001713 ORTHO05D001669 4.2e-09 65.5 112 31.2
Ca_18141_v3 Cicer arietinum L. HOM05D001713 ORTHO05D001669 5.5e-09 65.1 114 34.2
Eucgr.E02044 Eucalyptus grandis HOM05D001713 ORTHO05D001669 5.5e-09 65.1 126 32.5
Lalb_Chr15g0083841 Lupinus albus HOM05D001713 ORTHO05D001669 5.5e-09 65.1 113 32.7
Manes.18G110100 Manihot esculenta HOM05D001713 ORTHO05D001669 5.5e-09 65.1 117 35.0
Thecc.01G009300 Theobroma cacao HOM05D001713 ORTHO05D001669 5.5e-09 65.1 113 38.1
Cpa.g.sc3630.1 Carica papaya HOM05D001713 ORTHO05D001669 7.2e-09 64.7 114 32.5
Eucgr.E02029 Eucalyptus grandis HOM05D001713 ORTHO05D001669 7.2e-09 64.7 112 31.2
Eucgr.E02053 Eucalyptus grandis HOM05D001713 ORTHO05D001669 9.4e-09 64.3 119 30.3
Eucgr.E02057 Eucalyptus grandis HOM05D001713 ORTHO05D001669 9.4e-09 64.3 114 33.3
Sabra03G0021400 Salix brachista HOM05D001713 ORTHO05D001669 9.4e-09 64.3 116 28.4
Cpa.g.sc28.53 Carica papaya HOM05D001713 ORTHO05D001669 1.2e-08 63.9 113 34.5
Eucgr.E02060 Eucalyptus grandis HOM05D001713 ORTHO05D001669 1.2e-08 63.9 119 31.9
Potri.003G191901 Populus trichocarpa HOM05D001713 ORTHO05D001669 1.2e-08 63.9 116 28.4
Eucgr.E02048 Eucalyptus grandis HOM05D001713 ORTHO05D001669 1.6e-08 63.5 114 32.5
Potri.004G099600 Populus trichocarpa HOM05D001713 ORTHO05D001669 1.6e-08 63.5 114 27.2
CiPaw.11G135200 Carya illinoinensis HOM05D001713 ORTHO05D001669 2.1e-08 63.2 120 33.3
Eucgr.E01944 Eucalyptus grandis HOM05D001713 ORTHO05D001669 2.1e-08 63.2 117 32.5
Eucgr.E02039 Eucalyptus grandis HOM05D001713 ORTHO05D001669 2.1e-08 63.2 112 30.4
Eucgr.E02051 Eucalyptus grandis HOM05D001713 ORTHO05D001669 2.1e-08 63.2 112 32.1
Lj5g0023689 Lotus japonicus HOM05D001713 ORTHO05D001669 2.1e-08 63.2 113 31.0
Eucgr.E02074 Eucalyptus grandis HOM05D001713 ORTHO05D001669 2.7e-08 62.8 114 32.5
Ciclev10006908m.g Citrus clementina HOM05D001713 ORTHO05D001669 3.6e-08 62.4 116 31.0
Thecc.01G009000 Theobroma cacao HOM05D001713 ORTHO05D001669 3.6e-08 62.4 113 34.5
Ciclev10006773m.g Citrus clementina HOM05D001713 ORTHO05D001669 4.6e-08 62.0 116 30.2
Duzib264G0415 Durio zibethinus HOM05D001713 ORTHO05D001669 4.6e-08 62.0 112 33.9
Eucgr.L01801 Eucalyptus grandis HOM05D001713 ORTHO05D001669 4.6e-08 62.0 113 31.0
Sabra18G0027300 Salix brachista HOM05D001713 ORTHO05D001669 4.6e-08 62.0 116 27.6
TPR.G34966 Trifolium pratense HOM05D001713 ORTHO05D001669 4.6e-08 62.0 114 32.5
TAR374G0219 Trochodendron aralioides HOM05D001713 ORTHO05D001669 4.6e-08 62.0 114 32.5
TAR374G1468 Trochodendron aralioides HOM05D001713 ORTHO05D001669 4.6e-08 62.0 114 32.5
TAR374G1627 Trochodendron aralioides HOM05D001713 ORTHO05D001669 4.6e-08 62.0 114 32.5
Ciclev10006716m.g Citrus clementina HOM05D001713 ORTHO05D001669 7.9e-08 61.2 116 31.0
Haze_08832 Corylus avellana HOM05D001713 ORTHO05D001669 7.9e-08 61.2 121 31.4
CARHR072170 Cardamine hirsuta HOM05D001713 ORTHO05D001669 1.0e-07 60.8 111 27.0
Haze_09851 Corylus avellana HOM05D001713 ORTHO05D001669 1.0e-07 60.8 113 35.4
Lj6g0000820 Lotus japonicus HOM05D001713 ORTHO05D001669 1.0e-07 60.8 113 31.9
Lj6g0022283 Lotus japonicus HOM05D001713 ORTHO05D001669 1.0e-07 60.8 112 31.2
Manes.18G109800 Manihot esculenta HOM05D001713 ORTHO05D001669 1.0e-07 60.8 117 32.5
Medtr1g045700 Medicago truncatula HOM05D001713 ORTHO05D001669 1.0e-07 60.8 114 33.3
QL12p032673 Quercus lobata HOM05D001713 ORTHO05D001669 1.0e-07 60.8 113 31.0
Lj6g0011540 Lotus japonicus HOM05D001713 ORTHO05D001669 1.4e-07 60.5 112 31.2
PSO832G0642 Papaver somniferum HOM05D001713 ORTHO05D001669 1.4e-07 60.5 114 28.1
Sabra04G0080300 Salix brachista HOM05D001713 ORTHO05D001669 1.4e-07 60.5 118 28.0
Sabra04G0080400 Salix brachista HOM05D001713 ORTHO05D001669 1.4e-07 60.5 118 28.0
AT1G78640 Arabidopsis thaliana HOM05D001713 ORTHO05D001669 1.8e-07 60.1 119 30.3
Eucgr.E04365 Eucalyptus grandis HOM05D001713 ORTHO05D001669 1.8e-07 60.1 112 30.4
Manes.18G110700 Manihot esculenta HOM05D001713 ORTHO05D001669 1.8e-07 60.1 117 33.3
Thecc.01G009200 Theobroma cacao HOM05D001713 ORTHO05D001669 1.8e-07 60.1 113 33.6
TPR.G23964 Trifolium pratense HOM05D001713 ORTHO05D001669 1.8e-07 60.1 114 29.8
Cpa.g.sc85.9 Carica papaya HOM05D001713 ORTHO05D001669 3.0e-07 59.3 114 34.2
COL.COLO4_10852 Corchorus olitorius HOM05D001713 ORTHO05D001669 3.0e-07 59.3 114 30.7
Hma1.2p1_2547F.1_g324190 Hydrangea macrophylla HOM05D001713 ORTHO05D001669 3.0e-07 59.3 115 30.4
Hma1.2p1_2547F.1_g324191 Hydrangea macrophylla HOM05D001713 ORTHO05D001669 3.0e-07 59.3 115 30.4
Hma1.2p1_2547F.1_g324193 Hydrangea macrophylla HOM05D001713 ORTHO05D001669 3.0e-07 59.3 115 30.4
Manes.18G110650 Manihot esculenta HOM05D001713 ORTHO05D001669 3.0e-07 59.3 117 33.3
AT2G33720 Arabidopsis thaliana HOM05D001713 ORTHO05D001669 3.9e-07 58.9 116 30.2
Cfa012230 Carpinus fangiana HOM05D001713 ORTHO05D001669 3.9e-07 58.9 114 34.2
Cfa016920 Carpinus fangiana HOM05D001713 ORTHO05D001669 3.9e-07 58.9 125 34.4
COL.COLO4_05119 Corchorus olitorius HOM05D001713 ORTHO05D001669 3.9e-07 58.9 112 29.5
Psat5g198880 Pisum sativum HOM05D001713 ORTHO05D001669 3.9e-07 58.9 113 32.7
Prupe.1G396400 Prunus persica HOM05D001713 ORTHO05D001669 3.9e-07 58.9 115 35.7
Duzib268G1296 Durio zibethinus HOM05D001713 ORTHO05D001669 5.1e-07 58.5 113 31.9
PGR031G2861 Punica granatum HOM05D001713 ORTHO05D001669 5.1e-07 58.5 113 32.7
Carub.0004s1534 Capsella rubella HOM05D001713 ORTHO05D001669 6.7e-07 58.2 116 31.9
Eucgr.E02114 Eucalyptus grandis HOM05D001713 ORTHO05D001669 6.7e-07 58.2 112 32.1
QL08p058986 Quercus lobata HOM05D001713 ORTHO05D001669 6.7e-07 58.2 112 30.4
Cfa012186 Carpinus fangiana HOM05D001713 ORTHO05D001669 8.8e-07 57.8 125 32.0
Dinv38941 Davidia involucrata HOM05D001713 ORTHO05D001669 8.8e-07 57.8 115 29.6
QL02p074400 Quercus lobata HOM05D001713 ORTHO05D001669 8.8e-07 57.8 113 29.2
COL.COLO4_24578 Corchorus olitorius HOM05D001713 ORTHO05D001669 1.1e-06 57.4 114 33.3
Eucgr.E02054 Eucalyptus grandis HOM05D001713 ORTHO05D001669 1.1e-06 57.4 61 41.0
Sabra04G0086700 Salix brachista HOM05D001713 ORTHO05D001669 1.1e-06 57.4 118 27.1
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 1.1e-06 57.4 114 30.7
Atru.chr1.395 Acer truncatum HOM05D001713 ORTHO05D001669 1.5e-06 57.0 116 29.3
Eucgr.E01937 Eucalyptus grandis HOM05D001713 ORTHO05D001669 1.5e-06 57.0 123 33.3
Manes.18G110400 Manihot esculenta HOM05D001713 ORTHO05D001669 1.5e-06 57.0 117 32.5
Psat6g108560 Pisum sativum HOM05D001713 ORTHO05D001669 1.5e-06 57.0 112 28.6
Eucgr.E02075 Eucalyptus grandis HOM05D001713 ORTHO05D001669 2.0e-06 56.6 113 30.1
Cfa012233 Carpinus fangiana HOM05D001713 ORTHO05D001669 2.5e-06 56.2 113 32.7
FAN06G2933 Fragaria x ananassa HOM05D001713 ORTHO05D001669 2.5e-06 56.2 138 29.7
TPR.G10611 Trifolium pratense HOM05D001713 ORTHO05D001669 2.5e-06 56.2 114 30.7
TAR374G0415 Trochodendron aralioides HOM05D001713 ORTHO05D001669 3.3e-06 55.8 113 28.3
BcaB04g21444 Brassica carinata HOM05D001713 ORTHO05D001669 4.3e-06 55.5 123 30.1
Haze_03476 Corylus avellana HOM05D001713 ORTHO05D001669 4.3e-06 55.5 125 33.6
FvH4_7g12901 Fragaria vesca HOM05D001713 ORTHO05D001669 4.3e-06 55.5 138 29.7
Medtr6g004120 Medicago truncatula HOM05D001713 ORTHO05D001669 4.3e-06 55.5 68 38.2
QL02p074910 Quercus lobata HOM05D001713 ORTHO05D001669 4.3e-06 55.5 114 33.3
QL02p075024 Quercus lobata HOM05D001713 ORTHO05D001669 4.3e-06 55.5 114 33.3
AT1G78635 Arabidopsis thaliana HOM05D001713 ORTHO05D001669 5.7e-06 55.1 136 28.7
Eucgr.E01941 Eucalyptus grandis HOM05D001713 ORTHO05D001669 5.7e-06 55.1 114 30.7
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 7.4e-06 54.7 92 27.2
Haze_09172 Corylus avellana HOM05D001713 ORTHO05D001669 7.4e-06 54.7 114 27.2
Psat5g200760 Pisum sativum HOM05D001713 ORTHO05D001669 7.4e-06 54.7 113 31.9
TPR.G23983 Trifolium pratense HOM05D001713 ORTHO05D001669 7.4e-06 54.7 112 28.6
AL5G19040 Arabidopsis lyrata HOM05D001713 ORTHO05D001669 9.7e-06 54.3 113 30.1
A01p31850 Brassica napus HOM05D001713 ORTHO05D001669 9.7e-06 54.3 120 27.5
BraA01t03310Z Brassica rapa HOM05D001713 ORTHO05D001669 9.7e-06 54.3 120 27.5
Eucgr.E01933 Eucalyptus grandis HOM05D001713 ORTHO05D001669 9.7e-06 54.3 110 30.9
Psat5g200800 Pisum sativum HOM05D001713 ORTHO05D001669 9.7e-06 54.3 113 31.0
Potri.003G191700 Populus trichocarpa HOM05D001713 ORTHO05D001669 9.7e-06 54.3 113 26.5
RcHm_v2.0_Chr1g0351961 Rosa chinensis HOM05D001713 ORTHO05D001669 9.7e-06 54.3 116 31.9


User provided reference genes

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