Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.5e-189 666.0 337 100.0
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 2.1e-175 619.0 338 92.6
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 1.2e-173 613.2 339 91.7
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 6.0e-170 600.9 337 89.6
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 1.4e-166 589.7 339 89.7
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 3.0e-161 572.0 336 88.4
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 1.9e-160 569.3 340 86.8
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 1.9e-160 569.3 340 86.8
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 4.1e-158 561.6 341 86.8
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 4.1e-158 561.6 341 86.8
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 5.3e-150 534.6 346 80.9
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 2.2e-148 529.3 343 80.2
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 6.5e-132 474.6 293 78.8
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 1.2e-128 463.8 348 71.3
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 2.6e-128 462.6 295 78.6
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 9.8e-128 460.7 343 69.4
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 1.7e-127 459.9 350 68.0
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 2.2e-127 459.5 346 68.8
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 3.7e-127 458.8 352 68.5
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 6.3e-127 458.0 343 69.7
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 1.4e-126 456.8 298 74.8
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.4e-126 456.1 342 70.2
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 4.1e-126 455.3 316 72.5
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.2e-125 453.8 350 68.0
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 1.2e-125 453.8 346 69.7
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.0e-125 453.0 346 67.9
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 2.7e-125 452.6 298 73.8
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 3.5e-125 452.2 347 68.9
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.5e-125 452.2 348 67.0
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.5e-125 452.2 350 68.0
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 5.9e-125 451.4 296 75.0
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 1.0e-124 450.7 318 72.6
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 3.8e-124 448.7 337 69.7
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 3.8e-124 448.7 337 69.7
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 3.8e-124 448.7 315 73.3
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 6.5e-124 448.0 349 67.9
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 2.5e-123 446.0 293 76.5
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 3.2e-123 445.7 346 66.5
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 5.5e-123 444.9 351 67.0
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 9.4e-123 444.1 347 67.7
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 2.1e-122 443.0 348 66.4
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.0e-121 440.7 332 68.1
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 1.8e-121 439.9 320 70.6
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.0e-121 438.7 363 65.0
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 6.8e-121 438.0 350 67.1
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 8.8e-121 437.6 321 69.8
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 1.2e-120 437.2 301 72.4
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 1.5e-120 436.8 349 68.8
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 2.6e-120 436.0 347 67.7
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 3.4e-120 435.6 342 66.4
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 3.4e-120 435.6 263 81.4
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 5.7e-120 434.9 349 65.6
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 7.5e-120 434.5 293 73.0
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 7.5e-120 434.5 317 71.0
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 7.5e-120 434.5 309 70.2
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 2.2e-119 433.0 293 71.7
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 4.9e-119 431.8 350 65.4
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 4.9e-119 431.8 296 72.3
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 4.9e-119 431.8 296 72.6
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 4.9e-119 431.8 344 63.7
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 6.3e-119 431.4 343 66.2
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 3.1e-118 429.1 299 71.9
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 3.5e-117 425.6 383 60.3
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 1.0e-116 424.1 347 67.1
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 2.9e-116 422.5 303 70.0
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 6.6e-116 421.4 296 71.3
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 1.5e-115 420.2 334 67.7
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.9e-115 419.9 303 68.6
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 3.3e-115 419.1 350 64.0
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 7.2e-115 417.9 354 62.4
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.6e-114 416.8 347 63.1
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 1.0e-113 414.1 338 64.8
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 3.0e-113 412.5 305 69.5
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 6.8e-113 411.4 351 63.2
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 1.2e-112 410.6 307 67.8
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.2e-112 410.6 351 63.2
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 2.0e-112 409.8 250 79.2
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 3.7e-111 405.6 295 68.5
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 6.4e-111 404.8 295 69.2
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.4e-110 403.7 296 69.3
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 1.8e-110 403.3 345 62.3
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 2.4e-110 402.9 255 74.5
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 4.1e-110 402.1 324 64.8
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 9.2e-110 401.0 316 69.3
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 1.2e-109 400.6 348 62.6
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 2.3e-108 396.4 335 63.6
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.1e-107 394.0 225 83.1
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 1.6e-106 390.2 337 62.3
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 1.8e-105 386.7 293 69.6
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 4.6e-101 372.1 283 67.5
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 8.1e-98 361.3 356 57.6
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 3.1e-97 359.4 298 64.4
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 4.3e-91 339.0 316 60.4
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 1.2e-88 330.9 301 53.8
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 8.6e-84 314.7 317 55.5
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 2.6e-80 303.1 290 51.0
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 3.5e-77 292.7 250 58.0
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 1.7e-76 290.4 333 47.7
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 1.9e-75 287.0 163 84.0
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 4.8e-74 282.3 168 79.2
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 5.1e-68 262.3 182 69.8
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 5.6e-67 258.8 281 46.6
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.9e-62 243.8 139 81.3
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 5.6e-59 232.3 221 48.4
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 4.5e-56 222.6 132 82.6
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 2.7e-53 213.4 126 82.5
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 2.7e-53 213.4 126 82.5
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 9.6e-51 204.9 223 54.7
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 8.4e-47 191.8 132 71.2
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 6.1e-45 185.7 306 36.3
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 2.7e-37 160.2 285 34.4
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 4.1e-33 146.4 241 36.5
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 1.0e-31 141.7 107 69.2
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 1.6e-29 134.4 114 64.9
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 2.0e-24 117.5 202 41.1
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 1.3e-23 114.8 93 67.7
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 2.7e-21 107.1 78 66.7
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 6.7e-20 102.4 53 84.9
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 9.7e-19 98.6 116 56.9
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 5.5e-14 82.8 55 67.3
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 2.7e-13 80.5 130 40.8
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 6.8e-12 75.9 39 94.9
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 6.8e-12 75.9 39 94.9
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 6.8e-12 75.9 130 39.2
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 2.8e-10 70.5 38 78.9
Aa31LG11G9290 Aethionema arabicum HOM05D006315 ORTHO05D058479 4.2e-06 56.6 42 69.0
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 5.5e-06 56.2 167 29.9
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 5.5e-06 56.2 234 25.2


User provided reference genes

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