Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 2362.0 1207 100.0
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 2126.7 1207 89.1
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 2120.1 1208 88.8
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 2119.0 1207 88.6
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 2117.8 1208 88.8
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 2112.0 1207 88.5
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 2111.6 1207 88.6
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 2110.1 1207 87.5
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 2106.6 1208 88.4
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1964.5 1207 81.6
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1908.3 1187 80.5
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1881.7 1175 80.9
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1864.7 1187 79.0
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1839.7 1183 78.4
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1833.5 1205 80.1
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1725.7 1207 71.6
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1720.7 1209 71.5
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1711.4 1136 76.1
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1706.0 1214 71.2
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1704.5 1214 71.3
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1673.7 1200 70.2
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1664.4 1211 69.2
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1661.4 1208 69.5
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1661.0 1211 69.2
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1656.0 1216 69.2
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1651.0 1210 68.8
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1644.4 1200 68.8
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1642.5 1209 69.1
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1642.1 1207 68.6
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1640.9 1204 69.2
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1639.4 1207 69.8
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1634.8 1203 68.5
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1634.0 1208 69.0
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1630.2 1211 68.4
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1627.5 1211 67.6
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1624.8 1184 69.1
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1618.6 1204 68.2
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1617.8 1203 68.4
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1615.5 1201 68.3
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1609.3 1206 66.3
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1604.7 1207 67.2
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1601.6 1207 66.9
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1599.3 1207 66.9
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1598.6 1209 67.7
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1594.7 1207 66.6
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1594.3 1199 65.7
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1593.9 1205 67.3
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1591.6 1207 66.6
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1588.9 1207 66.5
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1588.2 1207 66.6
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1579.7 1217 65.8
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1578.5 1203 66.6
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1573.9 1202 66.0
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1570.8 1210 65.5
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1567.4 1202 66.5
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1561.6 1170 67.5
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1560.0 1177 67.9
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1560.0 1225 64.6
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1560.0 1200 66.6
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1558.1 1199 66.2
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1557.3 1210 64.2
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1552.7 1201 65.7
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1552.0 1206 66.3
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1546.6 1159 66.8
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1539.2 1209 63.7
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1536.5 1199 65.7
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1535.4 1201 64.9
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1533.9 1199 65.4
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1520.0 1206 63.8
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1519.2 1202 64.2
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1518.4 1202 63.8
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1517.3 1199 64.6
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1510.7 1167 65.0
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1503.0 1205 63.7
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1496.9 1199 63.1
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1496.9 1202 63.6
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1494.2 1200 63.2
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1491.1 1204 62.5
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1488.0 1184 63.7
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1485.3 1207 62.1
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1478.8 1211 64.0
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1464.1 1118 66.1
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1463.7 1204 62.2
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1461.0 1213 62.1
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1456.8 1198 61.4
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1456.0 1198 61.5
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1453.3 1201 61.7
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1447.6 1202 62.1
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1446.0 1202 63.1
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1415.2 1207 61.1
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1402.5 1137 62.2
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1395.2 885 78.8
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1387.5 1261 57.6
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1365.5 1206 59.1
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1339.7 1208 57.5
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1327.4 1024 65.2
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1326.2 1199 56.2
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1317.0 991 67.6
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1302.0 1281 55.8
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1295.8 1182 56.4
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1232.2 1213 52.8
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1151.7 1055 58.2
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1099.3 961 60.6
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1085.1 816 67.5
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 3.6e-297 1025.4 1052 55.8
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 4.6e-297 1025.0 836 63.9
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 2.0e-287 993.0 1146 49.3
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 5.7e-279 964.9 1179 47.4
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.3e-271 939.1 1146 47.3
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 2.9e-267 926.0 1146 46.7
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 5.0e-267 925.2 1170 47.7
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 5.0e-259 898.7 1238 41.3
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 4.0e-256 889.0 1236 40.4
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.7e-254 883.6 1237 41.9
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.8e-240 837.0 649 65.5
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 4.1e-237 825.9 1211 39.1
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 3.3e-218 763.1 796 52.1
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 2.0e-207 727.2 1214 36.6
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.9e-194 684.1 551 62.8
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.0e-187 660.2 569 59.8
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.0e-182 642.9 639 51.8
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.1e-172 609.4 538 58.2
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 9.1e-160 568.9 416 68.3
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.5e-157 561.6 471 63.7
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.0e-139 500.4 486 51.9
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 1.1e-109 402.5 321 63.6
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 5.8e-98 363.6 297 63.0
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 3.2e-72 278.1 210 65.7
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.6e-71 274.2 267 50.9
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 2.6e-66 258.5 210 64.3
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 4.8e-60 237.7 187 65.2
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 2.6e-53 215.3 231 54.5
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.8e-51 209.1 503 29.6
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 4.5e-50 204.5 474 31.6
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.4e-43 183.0 415 31.1
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 5.5e-40 171.0 109 78.0
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.8e-36 158.7 1174 21.7
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 2.1e-23 115.9 84 72.6
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.0e-22 113.6 96 59.4
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 1.6e-18 99.8 75 74.7
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 1.1e-16 93.6 85 62.4
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.9e-16 92.8 63 77.8
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.2e-15 90.1 208 31.2
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 8.9e-14 84.0 119 43.7
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 9.8e-13 80.5 70 58.6
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 8.3e-12 77.4 65 56.9
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 3.2e-11 75.5 75 53.3
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 3.2e-11 75.5 47 80.9
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 3.2e-11 75.5 47 80.9
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 9.2e-11 73.9 75 52.0
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 9.2e-11 73.9 73 56.2
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.7e-10 72.4 72 50.0
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 6.6e-09 67.8 88 47.7
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 8.6e-09 67.4 182 26.4
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 1.8e-06 59.7 270 23.7


User provided reference genes

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