Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR185720 Cardamine hirsuta HOM05D000311 ORTHO05D000183 2.9e-66 255.0 120 100.0
CARHR182210 Cardamine hirsuta HOM05D000311 ORTHO05D000183 5.5e-41 171.0 120 70.0
AT1G07390 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 5.3e-28 127.9 128 53.1
BraA09t41984Z Brassica rapa HOM05D000311 ORTHO05D000183 5.3e-28 127.9 124 52.4
A09p66460 Brassica napus HOM05D000311 ORTHO05D000183 1.6e-27 126.3 124 52.4
AL1G17550 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 4.5e-27 124.8 128 52.3
BcaC07g42463 Brassica carinata HOM05D000311 ORTHO05D000183 4.5e-27 124.8 124 50.8
C08p50620 Brassica napus HOM05D000311 ORTHO05D000183 4.5e-27 124.8 124 51.6
BcaC07g42004 Brassica carinata HOM05D000311 ORTHO05D000183 3.8e-26 121.7 120 51.7
BolC8t52590H Brassica oleracea HOM05D000311 ORTHO05D000183 6.5e-26 120.9 124 50.8
A09p66470 Brassica napus HOM05D000311 ORTHO05D000183 8.5e-26 120.6 124 49.2
Sp1g06140 Schrenkiella parvula HOM05D000311 ORTHO05D000183 8.5e-26 120.6 124 53.2
A08p26590 Brassica napus HOM05D000311 ORTHO05D000183 3.2e-25 118.6 125 52.0
Sp1g29920 Schrenkiella parvula HOM05D000311 ORTHO05D000183 2.1e-24 115.9 125 51.2
BcaC07g42003 Brassica carinata HOM05D000311 ORTHO05D000183 1.4e-23 113.2 106 51.9
BcaC07g42006 Brassica carinata HOM05D000311 ORTHO05D000183 1.4e-23 113.2 124 50.0
BolC8t52591H Brassica oleracea HOM05D000311 ORTHO05D000183 1.4e-23 113.2 124 50.0
AL1G17540 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 1.2e-22 110.2 129 51.2
Carub.0001s0669 Capsella rubella HOM05D000311 ORTHO05D000183 2.0e-22 109.4 97 57.7
BcaC07g42465 Brassica carinata HOM05D000311 ORTHO05D000183 2.6e-22 109.0 106 48.1
BolC3t19637H Brassica oleracea HOM05D000311 ORTHO05D000183 2.6e-22 109.0 125 48.8
BcaC01g01647 Brassica carinata HOM05D000311 ORTHO05D000183 9.7e-22 107.1 107 52.3
C03p73410 Brassica napus HOM05D000311 ORTHO05D000183 1.7e-21 106.3 125 48.0
CARHR007100 Cardamine hirsuta HOM05D000311 ORTHO05D000183 5.3e-20 101.3 97 55.7
CARHR006900 Cardamine hirsuta HOM05D000311 ORTHO05D000183 1.2e-19 100.1 123 48.8
C08p50630 Brassica napus HOM05D000311 ORTHO05D000183 6.3e-13 77.8 72 59.7
AL5G34150 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 7.0e-12 74.3 102 38.2
A09p66480 Brassica napus HOM05D000311 ORTHO05D000183 7.0e-12 74.3 75 52.0
Medtr4g016870 Medicago truncatula HOM05D000311 ORTHO05D000183 1.2e-11 73.6 102 36.3
AL1G17310 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 1.7e-10 69.7 81 45.7
CARHR163040 Cardamine hirsuta HOM05D000311 ORTHO05D000183 2.9e-10 68.9 100 37.0
Thhalv10010101m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 6.6e-10 67.8 106 34.0
Manes.04G110457 Manihot esculenta HOM05D000311 ORTHO05D000183 6.6e-10 67.8 100 39.0
QL02p090841 Quercus lobata HOM05D000311 ORTHO05D000183 6.6e-10 67.8 90 43.3
Lsat_1_v5_gn_8_33880 Lactuca sativa HOM05D000311 ORTHO05D000183 1.1e-09 67.0 102 35.3
QL04p004667 Quercus lobata HOM05D000311 ORTHO05D000183 9.5e-09 63.9 92 39.1
QL93p2015_0040 Quercus lobata HOM05D000311 ORTHO05D000183 9.5e-09 63.9 92 39.1
Duzib235G1357 Durio zibethinus HOM05D000311 ORTHO05D000183 2.1e-08 62.8 87 37.9
Medtr4g016850 Medicago truncatula HOM05D000311 ORTHO05D000183 2.1e-08 62.8 103 34.0
C06p21070 Brassica napus HOM05D000311 ORTHO05D000183 2.8e-08 62.4 102 33.3
Carub.0002s0642 Capsella rubella HOM05D000311 ORTHO05D000183 2.8e-08 62.4 106 34.0
TAR626G1657 Trochodendron aralioides HOM05D000311 ORTHO05D000183 2.8e-08 62.4 105 33.3
BolC6t37292H Brassica oleracea HOM05D000311 ORTHO05D000183 3.6e-08 62.0 102 33.3
Medtr4g015930 Medicago truncatula HOM05D000311 ORTHO05D000183 3.6e-08 62.0 109 35.8
QL04p004305 Quercus lobata HOM05D000311 ORTHO05D000183 3.6e-08 62.0 92 35.9
BcaB02g07799 Brassica carinata HOM05D000311 ORTHO05D000183 4.7e-08 61.6 99 33.3
TPR.G13331 Trifolium pratense HOM05D000311 ORTHO05D000183 4.7e-08 61.6 104 30.8
TPR.G31003 Trifolium pratense HOM05D000311 ORTHO05D000183 4.7e-08 61.6 104 34.6
Manes.04G110527 Manihot esculenta HOM05D000311 ORTHO05D000183 6.1e-08 61.2 92 38.0
Oeu010080.1 Olea europaea HOM05D000311 ORTHO05D000183 6.1e-08 61.2 102 38.2
QL04p004471 Quercus lobata HOM05D000311 ORTHO05D000183 6.1e-08 61.2 93 38.7
Oeu010079.1 Olea europaea HOM05D000311 ORTHO05D000183 8.0e-08 60.8 107 35.5
Rhsim01G0053200 Rhododendron simsii HOM05D000311 ORTHO05D000183 8.0e-08 60.8 86 37.2
TAR636G1126 Trochodendron aralioides HOM05D000311 ORTHO05D000183 8.0e-08 60.8 108 33.3
QL05p085350 Quercus lobata HOM05D000311 ORTHO05D000183 1.0e-07 60.5 100 35.0
Rhsim01G0102000 Rhododendron simsii HOM05D000311 ORTHO05D000183 1.0e-07 60.5 91 38.5
Hma1.2p1_0949F.1_g240710 Hydrangea macrophylla HOM05D000311 ORTHO05D000183 1.4e-07 60.1 108 33.3
Rhsim01G0101800 Rhododendron simsii HOM05D000311 ORTHO05D000183 1.4e-07 60.1 65 40.0
A02p19140 Brassica napus HOM05D000311 ORTHO05D000183 1.8e-07 59.7 103 35.9
CSS0030458 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 1.8e-07 59.7 105 30.5
EL10Ac9g21893 Beta vulgaris HOM05D000311 ORTHO05D000183 2.3e-07 59.3 104 30.8
C06p48340 Brassica napus HOM05D000311 ORTHO05D000183 2.3e-07 59.3 103 33.0
CiPaw.01G103400 Carya illinoinensis HOM05D000311 ORTHO05D000183 2.3e-07 59.3 78 35.9
Thhalv10000563m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 2.3e-07 59.3 102 29.4
QL04p003897 Quercus lobata HOM05D000311 ORTHO05D000183 2.3e-07 59.3 92 34.8
CiPaw.01G052600 Carya illinoinensis HOM05D000311 ORTHO05D000183 3.0e-07 58.9 110 30.9
BcaC05g24568 Brassica carinata HOM05D000311 ORTHO05D000183 4.0e-07 58.5 103 35.0
CiPaw.01G103100 Carya illinoinensis HOM05D000311 ORTHO05D000183 4.0e-07 58.5 78 35.9
QL04p003852 Quercus lobata HOM05D000311 ORTHO05D000183 4.0e-07 58.5 83 37.3
QL04p004575 Quercus lobata HOM05D000311 ORTHO05D000183 4.0e-07 58.5 92 35.9
BcaC08g46821 Brassica carinata HOM05D000311 ORTHO05D000183 5.2e-07 58.2 103 32.0
CARHR067370 Cardamine hirsuta HOM05D000311 ORTHO05D000183 5.2e-07 58.2 102 34.3
QL04p004370 Quercus lobata HOM05D000311 ORTHO05D000183 5.2e-07 58.2 92 37.0
Sed0023420 Sechium edule HOM05D000311 ORTHO05D000183 5.2e-07 58.2 105 33.3
TPR.G22930 Trifolium pratense HOM05D000311 ORTHO05D000183 5.2e-07 58.2 105 33.3
A07p21470 Brassica napus HOM05D000311 ORTHO05D000183 6.8e-07 57.8 101 31.7
BraA02t06964Z Brassica rapa HOM05D000311 ORTHO05D000183 6.8e-07 57.8 103 34.0
CARHR053850 Cardamine hirsuta HOM05D000311 ORTHO05D000183 6.8e-07 57.8 100 33.0
TAR678G0001 Trochodendron aralioides HOM05D000311 ORTHO05D000183 6.8e-07 57.8 79 38.0
C02p31770 Brassica napus HOM05D000311 ORTHO05D000183 8.9e-07 57.4 103 31.1
BolC2t09204H Brassica oleracea HOM05D000094 ORTHO05D003883 8.9e-07 57.4 103 31.1
Aa31LG4G4490 Aethionema arabicum HOM05D000311 ORTHO05D000183 1.2e-06 57.0 115 32.2
AT1G58190 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 1.2e-06 57.0 100 33.0
COL.COLO4_00371 Corchorus olitorius HOM05D000311 ORTHO05D000183 1.2e-06 57.0 95 41.1
Medtr4g016740 Medicago truncatula HOM05D000311 ORTHO05D000183 1.2e-06 57.0 113 32.7
QL05p013238 Quercus lobata HOM05D000311 ORTHO05D000183 1.2e-06 57.0 69 42.0
QL05p014014 Quercus lobata HOM05D000311 ORTHO05D000183 1.2e-06 57.0 91 36.3
QL05p014144 Quercus lobata HOM05D000311 ORTHO05D000183 1.2e-06 57.0 89 37.1
QL04p004701 Quercus lobata HOM05D000311 ORTHO05D000183 1.5e-06 56.6 92 34.8
BcaB05g24841 Brassica carinata HOM05D000311 ORTHO05D000183 2.0e-06 56.2 103 32.0
BcaC05g24569 Brassica carinata HOM05D000311 ORTHO05D000183 2.0e-06 56.2 103 34.0
Gohir.D10G159866 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.0e-06 56.2 91 34.1
Gorai.011G177700 Gossypium raimondii HOM05D000071 ORTHO05D000029 2.0e-06 56.2 91 34.1
Gorai.011G179600 Gossypium raimondii HOM05D000071 ORTHO05D000029 2.0e-06 56.2 91 34.1
PSO455G0083 Papaver somniferum HOM05D000071 ORTHO05D003524 2.0e-06 56.2 98 31.6
TPR.G27434 Trifolium pratense HOM05D000311 ORTHO05D000183 2.0e-06 56.2 107 33.6
BcaB05g24838 Brassica carinata HOM05D000311 ORTHO05D000183 2.6e-06 55.8 103 35.0
C06p33540 Brassica napus HOM05D000311 ORTHO05D000183 2.6e-06 55.8 102 33.3
BraA07t29834Z Brassica rapa HOM05D000311 ORTHO05D000183 2.6e-06 55.8 89 33.7
Gorai.005G031800 Gossypium raimondii HOM05D000311 ORTHO05D000183 2.6e-06 55.8 105 32.4
Medtr4g016790 Medicago truncatula HOM05D000311 ORTHO05D000183 2.6e-06 55.8 116 30.2
Medtr4g016810 Medicago truncatula HOM05D000311 ORTHO05D000183 2.6e-06 55.8 106 32.1
Thecc.06G032600 Theobroma cacao HOM05D000311 ORTHO05D000183 2.6e-06 55.8 103 27.2
VMungo0331G1915 Vigna mungo HOM05D000311 ORTHO05D000183 2.6e-06 55.8 69 39.1
Carub.0004s0515 Capsella rubella HOM05D000311 ORTHO05D000183 3.4e-06 55.5 102 32.4
CsaV3_7G032220 Cucumis sativus L. HOM05D000311 ORTHO05D000183 3.4e-06 55.5 116 30.2
Duzib192G0408 Durio zibethinus HOM05D000311 ORTHO05D000183 4.4e-06 55.1 96 33.3
Gohir.A05G389900 Gossypium hirsutum HOM05D000311 ORTHO05D000183 4.4e-06 55.1 80 37.5
Gohir.D02G026300 Gossypium hirsutum HOM05D000311 ORTHO05D000183 4.4e-06 55.1 103 33.0
QL04p003704 Quercus lobata HOM05D000311 ORTHO05D000183 4.4e-06 55.1 71 38.0
TPR.G38647 Trifolium pratense HOM05D000311 ORTHO05D000183 4.4e-06 55.1 86 32.6
BcaC08g46822 Brassica carinata HOM05D000311 ORTHO05D000183 5.7e-06 54.7 103 31.1
QL04p003748 Quercus lobata HOM05D000311 ORTHO05D000183 5.7e-06 54.7 71 38.0
QL05p012854 Quercus lobata HOM05D000311 ORTHO05D000183 5.7e-06 54.7 102 34.3
QL05p013662 Quercus lobata HOM05D000311 ORTHO05D000183 5.7e-06 54.7 69 39.1
TPR.G29355 Trifolium pratense HOM05D000311 ORTHO05D000183 5.7e-06 54.7 104 30.8
CiPaw.15G113300 Carya illinoinensis HOM05D000311 ORTHO05D000183 7.5e-06 54.3 92 34.8
Rhsim01G0024100 Rhododendron simsii HOM05D000311 ORTHO05D000183 7.5e-06 54.3 73 38.4
Rhsim01G0054100 Rhododendron simsii HOM05D000311 ORTHO05D000183 7.5e-06 54.3 93 36.6
GSVIVG01013974001 Vitis vinifera HOM05D000311 ORTHO05D000183 7.5e-06 54.3 103 35.0
Actinidia13955 Actinidia chinensis HOM05D000311 ORTHO05D000183 9.8e-06 53.9 98 31.6
arahy.Tifrunner.gnm1.ann1.K8QYDN Arachis hypogaea HOM05D000071 ORTHO05D000029 9.8e-06 53.9 74 40.5
Medtr2g016200 Medicago truncatula HOM05D000311 ORTHO05D000183 9.8e-06 53.9 88 33.0
Oeu011160.1 Olea europaea HOM05D000311 ORTHO05D000183 9.8e-06 53.9 78 39.7
QL04p003552 Quercus lobata HOM05D000311 ORTHO05D000183 9.8e-06 53.9 96 33.3
QL04p004418 Quercus lobata HOM05D000311 ORTHO05D000183 9.8e-06 53.9 67 37.3


User provided reference genes

Program Settings