Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.8e-102 375.9 193 100.0
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 5.3e-86 321.2 197 83.2
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 5.8e-85 317.8 197 83.8
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 5.3e-78 294.7 193 78.2
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.3e-76 290.0 196 79.6
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 2.2e-76 289.3 197 75.1
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 3.2e-75 285.4 193 73.6
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 3.6e-74 282.0 198 73.7
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 6.7e-73 277.7 190 70.5
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 3.1e-70 268.9 190 69.5
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 6.9e-70 267.7 190 68.9
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.2e-69 266.9 190 68.9
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 3.4e-69 265.4 190 68.4
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.4e-67 260.0 197 70.1
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 1.4e-62 243.4 195 64.1
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 3.8e-60 235.3 200 61.5
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.9e-59 233.0 200 62.0
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 4.7e-58 228.4 197 60.9
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.0e-57 227.3 197 60.9
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.0e-57 227.3 197 60.9
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.4e-57 226.9 197 60.4
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 2.3e-57 226.1 197 60.9
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.0e-57 225.7 198 58.1
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 1.1e-56 223.8 204 57.4
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 1.1e-56 223.8 192 57.3
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.5e-56 223.4 204 57.4
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 2.0e-56 223.0 192 57.3
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 2.6e-56 222.6 198 58.1
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 4.4e-56 221.9 200 58.5
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 5.7e-56 221.5 199 57.8
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 7.4e-56 221.1 197 58.4
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 9.7e-56 220.7 197 58.4
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 1.7e-55 219.9 193 58.5
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.7e-55 219.9 192 56.8
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.7e-55 218.8 204 56.4
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 8.2e-55 217.6 197 56.3
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.1e-54 217.2 197 58.9
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 1.4e-54 216.9 199 56.3
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.8e-54 216.5 197 58.4
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.1e-54 215.3 195 57.4
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 5.3e-54 214.9 201 56.7
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 5.3e-54 214.9 197 57.9
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 9.1e-54 214.2 199 56.3
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.6e-53 213.4 197 57.9
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.5e-53 211.8 195 56.4
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 4.5e-53 211.8 200 57.0
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 5.9e-53 211.5 199 55.3
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 5.9e-53 211.5 199 56.8
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 5.9e-53 211.5 200 56.5
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 5.9e-53 211.5 197 56.3
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 7.7e-53 211.1 195 55.4
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.2e-52 209.5 196 56.1
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 2.9e-52 209.1 193 53.9
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 3.8e-52 208.8 197 56.9
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 3.8e-52 208.8 199 57.8
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 5.0e-52 208.4 198 55.6
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 6.5e-52 208.0 198 56.1
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.5e-51 206.8 201 54.7
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.9e-51 206.5 191 57.6
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.9e-51 206.5 194 54.1
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.9e-51 206.5 194 53.6
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.5e-51 206.1 194 53.6
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 7.2e-51 204.5 198 55.6
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 9.4e-51 204.1 207 53.6
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.2e-50 203.8 194 52.6
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.2e-50 203.8 209 54.1
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 2.1e-50 203.0 187 55.6
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 2.7e-50 202.6 194 53.6
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 2.7e-50 202.6 198 55.6
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.7e-50 202.6 191 55.5
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 3.6e-50 202.2 206 53.4
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 3.6e-50 202.2 193 53.9
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 4.7e-50 201.8 193 53.4
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 4.7e-50 201.8 184 53.8
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 4.7e-50 201.8 195 52.3
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 6.1e-50 201.4 194 52.1
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 6.1e-50 201.4 170 56.5
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 6.1e-50 201.4 187 55.1
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 1.0e-49 200.7 197 53.8
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.0e-49 200.7 197 55.8
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 1.0e-49 200.7 195 51.8
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.4e-49 200.3 187 54.5
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 1.8e-49 199.9 206 52.9
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.0e-49 199.1 194 52.1
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 5.2e-49 198.4 195 50.3
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.5e-48 196.8 206 51.9
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 4.4e-48 195.3 194 51.5
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 2.2e-47 193.0 207 51.7
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.8e-47 191.8 183 53.0
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 6.3e-47 191.4 207 50.2
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 8.3e-47 191.0 211 51.2
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.4e-46 190.3 182 54.9
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.8e-46 189.9 189 53.4
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.8e-46 189.9 211 51.7
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 3.1e-46 189.1 194 52.1
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 7.7e-45 184.5 197 49.2
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 5.0e-44 181.8 192 53.6
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 8.5e-44 181.0 183 54.6
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 1.1e-43 180.6 195 49.2
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.9e-43 179.9 189 51.3
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 2.5e-43 179.5 194 52.1
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 3.2e-43 179.1 192 48.4
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.2e-43 178.7 160 57.5
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 4.2e-43 178.7 197 51.8
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 7.2e-43 177.9 188 51.1
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 4.7e-42 175.3 169 53.8
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 1.8e-41 173.3 196 51.0
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.5e-40 170.2 195 47.2
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 4.4e-40 168.7 196 46.4
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 7.5e-40 167.9 288 37.8
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 2.2e-39 166.4 198 49.0
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 8.3e-39 164.5 197 48.2
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.1e-38 162.5 178 48.3
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 4.1e-38 162.2 254 40.2
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 7.0e-38 161.4 200 48.5
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 3.5e-37 159.1 180 48.9
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.5e-37 158.7 191 46.6
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 1.0e-36 157.5 193 49.2
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.3e-36 157.1 195 45.6
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 5.0e-36 155.2 195 45.1
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.5e-35 153.7 160 50.6
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 9.5e-35 151.0 167 47.3
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 9.5e-35 151.0 184 47.8
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 2.1e-34 149.8 179 45.8
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.8e-33 146.7 191 42.9
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 6.8e-33 144.8 126 54.8
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 3.4e-32 142.5 116 63.8
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 7.5e-32 141.4 116 64.7
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 7.5e-32 141.4 156 51.9
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.1e-30 137.5 197 43.7
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 3.9e-28 129.0 101 57.4
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 4.3e-27 125.6 183 40.4
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 2.0e-24 116.7 126 47.6
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 2.9e-23 112.8 122 44.3
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 1.4e-22 110.5 122 53.3
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.2e-21 107.5 187 39.6
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.6e-21 107.1 102 52.0
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.5e-19 100.5 101 47.5
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 4.3e-19 99.0 154 39.6
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 9.5e-19 97.8 126 42.9
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 2.3e-17 93.2 143 41.3
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 2.3e-17 93.2 96 49.0
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 1.5e-16 90.5 92 48.9
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 2.0e-16 90.1 118 44.1
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 5.8e-16 88.6 137 40.1
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 2.2e-15 86.7 117 46.2
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 7.1e-14 81.6 97 46.4
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 3.3e-11 72.8 78 48.7
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.1e-09 67.8 103 45.6
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 2.3e-09 66.6 65 50.8
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 6.8e-09 65.1 70 52.9
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 1.2e-08 64.3 56 58.9
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 1.2e-08 64.3 65 50.8
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 3.4e-08 62.8 123 34.1
AL7G43980 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.7e-07 60.5 44 72.7
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.1e-06 57.8 102 38.2


User provided reference genes

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