Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 1.3e-246 855.9 436 100.0
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.8e-219 765.8 437 88.8
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 2.0e-213 745.7 437 88.1
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.1e-211 740.0 442 86.0
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 2.4e-211 738.8 442 85.3
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 4.2e-208 728.0 442 85.1
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 5.5e-208 727.6 442 84.6
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 1.0e-206 723.4 442 84.6
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 2.3e-206 722.2 442 84.8
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 2.3e-206 722.2 442 84.8
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 6.3e-204 714.1 442 84.2
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 5.2e-198 694.5 441 81.9
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 2.4e-195 685.6 402 86.3
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 3.5e-170 602.1 440 69.5
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 9.9e-165 583.9 445 69.0
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 4.9e-164 581.6 450 67.3
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 1.9e-163 579.7 447 66.7
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 3.2e-163 578.9 447 68.2
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 9.2e-163 577.4 449 65.9
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 1.2e-162 577.0 446 66.6
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 2.1e-162 576.2 447 67.3
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.1e-162 576.2 450 67.1
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 3.5e-162 575.5 454 65.2
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 7.8e-162 574.3 442 68.3
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 1.5e-160 570.1 447 65.8
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 1.5e-160 570.1 447 65.8
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.1e-158 563.9 446 67.3
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 2.2e-140 503.1 420 62.6
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 7.1e-139 498.0 452 59.5
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 7.9e-138 494.6 448 60.3
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.8e-137 493.4 449 58.8
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.8e-137 493.4 452 59.1
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 5.1e-137 491.9 447 58.8
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 6.7e-137 491.5 407 62.4
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 6.7e-137 491.5 452 59.3
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.5e-136 489.6 448 58.7
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 2.5e-136 489.6 458 59.0
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 4.3e-136 488.8 452 59.1
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 7.4e-136 488.0 452 59.3
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 4.8e-135 485.3 449 58.1
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 2.4e-134 483.0 413 62.0
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 4.0e-134 482.3 452 60.4
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 4.5e-133 478.8 454 57.5
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 2.2e-132 476.5 410 61.0
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 4.9e-132 475.3 450 58.7
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 6.5e-132 474.9 449 58.1
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 1.4e-131 473.8 406 60.6
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 2.5e-131 473.0 440 57.5
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.2e-130 470.7 388 62.9
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 1.6e-130 470.3 442 57.5
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 6.1e-130 468.4 412 60.7
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 3.9e-129 465.7 449 57.0
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 3.9e-129 465.7 427 58.5
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 8.7e-129 464.5 456 58.8
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 1.1e-128 464.2 457 56.5
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 1.1e-128 464.2 412 60.4
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 1.5e-128 463.8 455 58.0
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 1.9e-128 463.4 443 56.9
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 3.3e-128 462.6 446 57.4
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 3.3e-128 462.6 413 58.6
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 2.2e-127 459.9 437 57.7
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 6.3e-127 458.4 393 60.6
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 6.3e-127 458.4 449 56.6
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 3.1e-126 456.1 393 59.8
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 6.5e-124 448.4 415 59.5
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 3.6e-122 442.6 394 57.1
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 7.9e-122 441.4 408 56.4
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 1.4e-118 430.6 447 54.6
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 1.4e-118 430.6 371 60.9
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 1.4e-118 430.6 387 59.7
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 5.3e-118 428.7 417 55.6
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 6.9e-118 428.3 453 52.1
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.7e-114 416.4 447 53.0
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.9e-114 414.8 447 53.0
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 1.0e-113 414.5 393 55.5
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.0e-113 414.5 392 54.3
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 1.4e-113 414.1 395 54.2
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 1.8e-113 413.7 395 54.4
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.8e-113 413.7 392 54.6
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 2.0e-112 410.2 422 52.6
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 2.6e-112 409.8 456 51.3
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.3e-111 407.5 455 51.0
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 6.3e-111 405.2 424 51.9
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.1e-110 404.4 401 54.1
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 1.1e-110 404.4 444 51.6
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 5.3e-110 402.1 397 56.2
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 3.8e-108 396.0 458 48.5
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 9.4e-107 391.3 444 49.1
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 2.7e-106 389.8 457 48.6
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 1.3e-103 380.9 415 48.7
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 3.7e-103 379.4 330 59.7
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.1e-102 377.9 386 53.4
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 2.4e-102 376.7 431 49.4
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 9.1e-102 374.8 416 49.3
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 9.1e-102 374.8 459 48.4
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 2.2e-100 370.2 345 57.4
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 2.5e-99 366.7 379 51.2
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 5.5e-99 365.5 427 48.5
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 1.2e-93 347.8 405 48.1
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.9e-91 340.5 348 53.4
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 2.5e-91 340.1 385 48.6
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 6.1e-90 335.5 396 49.0
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 2.3e-89 333.6 288 61.8
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 5.2e-89 332.4 450 47.1
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 1.5e-88 330.9 348 52.6
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 1.4e-81 307.8 376 47.6
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.8e-78 297.4 412 43.0
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 2.5e-75 287.0 337 51.0
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 4.3e-75 286.2 346 49.7
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 3.7e-71 273.1 401 40.6
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 6.0e-69 265.8 398 42.2
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 3.0e-68 263.5 254 57.9
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 7.3e-67 258.8 433 45.0
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 5.8e-64 249.2 229 59.8
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 7.5e-64 248.8 227 56.8
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 7.8e-61 238.8 267 53.6
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.9e-59 234.2 391 38.9
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 7.3e-59 232.3 255 48.6
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 1.3e-55 221.5 389 36.5
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 4.6e-53 213.0 397 36.0
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 5.8e-48 196.1 420 36.2
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 2.0e-24 117.9 232 34.9
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 5.5e-22 109.8 311 30.9
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 1.3e-20 105.1 164 39.0
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 3.0e-20 104.0 214 32.7
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 6.9e-17 92.8 157 36.3
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 2.2e-15 87.8 85 48.2
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 5.7e-11 73.2 408 25.2
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 3.7e-10 70.5 111 42.3
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 2.9e-07 60.8 83 41.0


User provided reference genes

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