Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 4.4e-59 231.1 117 100.0
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 2.8e-13 79.0 50 82.0
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 8.9e-12 73.9 48 75.0
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 1.2e-11 73.6 50 76.0
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 1.2e-11 73.6 50 76.0
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 4.4e-11 71.6 50 72.0
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.9e-09 66.2 50 64.0
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 2.4e-09 65.9 50 64.0
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 7.1e-09 64.3 50 64.0
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 7.1e-09 64.3 50 64.0
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 2.1e-08 62.8 50 60.0
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 2.1e-08 62.8 50 60.0
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 3.5e-08 62.0 50 64.0
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 4.6e-08 61.6 50 60.0
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 4.6e-08 61.6 50 60.0
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 4.6e-08 61.6 50 60.0
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 4.6e-08 61.6 50 60.0
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 7.8e-08 60.8 50 60.0
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 7.8e-08 60.8 50 60.0
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 1.0e-07 60.5 48 58.3
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 1.0e-07 60.5 50 60.0
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.0e-07 60.5 48 58.3
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 1.0e-07 60.5 48 60.4
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.3e-07 60.1 48 58.3
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 1.3e-07 60.1 48 58.3
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 1.7e-07 59.7 48 56.2
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 2.3e-07 59.3 50 60.0
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.3e-07 59.3 50 62.0
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 2.3e-07 59.3 48 58.3
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 3.0e-07 58.9 48 58.3
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 3.0e-07 58.9 48 58.3
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 3.0e-07 58.9 48 60.4
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 3.9e-07 58.5 48 56.2
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 3.9e-07 58.5 50 58.0
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 3.9e-07 58.5 50 58.0
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 3.9e-07 58.5 50 58.0
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 3.9e-07 58.5 48 58.3
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 3.9e-07 58.5 48 54.2
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 5.1e-07 58.2 50 60.0
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 5.1e-07 58.2 50 56.0
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 5.1e-07 58.2 50 56.0
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.1e-07 58.2 48 56.2
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 5.1e-07 58.2 50 58.0
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 6.6e-07 57.8 50 56.0
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 6.6e-07 57.8 50 56.0
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 6.6e-07 57.8 48 56.2
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 6.6e-07 57.8 48 58.3
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 8.6e-07 57.4 48 56.2
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 8.6e-07 57.4 48 56.2
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 8.6e-07 57.4 48 54.2
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 8.6e-07 57.4 48 56.2
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 8.6e-07 57.4 50 56.0
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 8.6e-07 57.4 50 56.0
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 1.1e-06 57.0 50 58.0
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 1.1e-06 57.0 48 56.2
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 1.5e-06 56.6 48 54.2
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 1.5e-06 56.6 48 52.1
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 1.9e-06 56.2 50 54.0
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 1.9e-06 56.2 50 54.0
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.9e-06 56.2 48 56.2
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.9e-06 56.2 48 56.2
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 1.9e-06 56.2 48 54.2
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 1.9e-06 56.2 48 56.2
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 2.5e-06 55.8 48 56.2
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.5e-06 55.8 48 54.2
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 3.3e-06 55.5 50 56.0
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 3.3e-06 55.5 48 54.2
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 3.3e-06 55.5 48 54.2
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 3.3e-06 55.5 48 52.1
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 4.3e-06 55.1 48 52.1
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 5.6e-06 54.7 48 54.2
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 5.6e-06 54.7 48 56.2
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 5.6e-06 54.7 39 61.5
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 5.6e-06 54.7 39 61.5
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 5.6e-06 54.7 39 61.5
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 7.3e-06 54.3 48 50.0
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 7.3e-06 54.3 39 59.0
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 7.3e-06 54.3 39 59.0
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 7.3e-06 54.3 50 54.0
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 9.5e-06 53.9 42 52.4
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 9.5e-06 53.9 48 50.0
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 9.5e-06 53.9 48 47.9
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 9.5e-06 53.9 48 47.9
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 9.5e-06 53.9 48 54.2
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 9.5e-06 53.9 39 59.0
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 9.5e-06 53.9 45 55.6
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 9.5e-06 53.9 48 52.1
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 9.5e-06 53.9 48 50.0


User provided reference genes

Program Settings