Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 8.8e-274 946.4 506 100.0
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 1.4e-234 816.2 516 85.5
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 1.8e-234 815.8 513 81.7
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 9.8e-233 810.1 511 84.3
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 3.3e-228 795.0 517 81.6
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 1.1e-226 790.0 515 80.8
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 1.4e-226 789.6 519 81.5
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 2.6e-225 785.4 520 81.5
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 1.6e-222 776.2 518 81.1
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 7.8e-222 773.9 517 80.5
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 5.1e-221 771.2 517 79.5
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 2.2e-208 729.2 503 79.1
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 1.6e-206 723.0 488 79.1
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 7.7e-153 544.7 516 55.8
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 2.2e-152 543.1 516 55.6
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 6.5e-152 541.6 513 55.8
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 1.1e-151 540.8 514 54.3
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 8.0e-150 534.6 512 55.3
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 1.8e-149 533.5 512 55.5
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 1.2e-148 530.8 514 55.1
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 1.5e-148 530.4 514 54.7
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 2.0e-148 530.0 518 54.6
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 5.7e-148 528.5 516 54.8
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 5.7e-148 528.5 516 54.8
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 3.5e-145 519.2 519 50.3
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 7.7e-145 518.1 514 52.9
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 1.2e-142 510.8 512 52.0
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 2.7e-142 509.6 514 54.9
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 2.0e-140 503.4 516 55.4
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 5.7e-140 501.9 528 55.5
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 9.8e-140 501.1 496 56.7
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 1.4e-138 497.3 517 53.8
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 5.4e-138 495.4 514 50.4
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 5.4e-138 495.4 481 53.0
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 3.8e-136 489.2 504 49.4
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 6.6e-136 488.4 514 51.0
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 1.1e-135 487.6 511 51.1
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 5.6e-135 485.3 515 53.0
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 1.6e-134 483.8 513 49.7
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 2.8e-134 483.0 495 53.7
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 1.4e-133 480.7 507 51.3
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 1.8e-133 480.3 506 50.4
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 4.0e-133 479.2 516 51.6
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 5.2e-133 478.8 509 50.9
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 4.4e-132 475.7 423 55.3
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 4.4e-132 475.7 510 51.6
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 9.8e-132 474.6 502 50.2
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 3.7e-131 472.6 505 49.1
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 9.2e-130 468.0 514 51.0
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 9.2e-130 468.0 513 50.5
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.2e-129 467.6 505 48.7
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 2.7e-129 466.5 424 55.4
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 1.7e-128 463.8 424 54.2
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 1.7e-128 463.8 511 50.7
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 1.7e-128 463.8 519 52.4
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 3.0e-128 463.0 510 48.4
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 3.0e-128 463.0 423 54.8
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.1e-127 461.1 505 47.9
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 2.5e-127 459.9 509 48.9
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 3.3e-127 459.5 510 48.6
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 3.3e-127 459.5 503 47.3
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 1.2e-126 457.6 518 49.0
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 2.8e-126 456.4 512 46.3
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 2.8e-126 456.4 508 46.5
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 1.8e-125 453.8 515 49.7
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 4.0e-125 452.6 511 47.2
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 1.1e-122 444.5 534 45.5
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 7.0e-122 441.8 507 52.3
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 1.6e-121 440.7 522 50.6
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 2.0e-121 440.3 488 49.4
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 3.0e-120 436.4 494 47.8
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 8.6e-120 434.9 493 47.9
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 1.1e-119 434.5 506 51.2
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 9.5e-119 431.4 504 49.2
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 4.7e-118 429.1 512 47.7
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 6.2e-118 428.7 512 44.7
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 1.4e-117 427.6 514 47.1
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 1.4e-117 427.6 487 47.8
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 1.8e-117 427.2 491 48.7
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.3e-115 421.0 509 44.0
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 2.9e-115 419.9 519 50.5
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 8.3e-115 418.3 487 47.4
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 1.1e-114 417.9 486 46.5
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 9.2e-114 414.8 495 47.7
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 9.2e-114 414.8 491 47.5
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 1.3e-112 411.0 391 54.2
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 3.9e-112 409.5 514 48.8
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 2.5e-111 406.8 505 48.7
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 3.3e-111 406.4 511 45.2
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 2.8e-110 403.3 496 47.0
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 2.9e-107 393.3 490 45.7
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 5.4e-106 389.0 504 46.6
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 4.6e-105 386.0 345 54.2
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 2.1e-102 377.1 466 49.4
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 2.0e-100 370.5 412 48.1
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 1.3e-99 367.9 509 42.0
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 6.4e-99 365.5 496 43.5
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 3.3e-95 353.2 517 40.0
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 3.5e-89 333.2 332 50.6
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 1.3e-86 324.7 270 57.4
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 3.9e-80 303.1 384 42.4
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 1.3e-72 278.1 198 64.6
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 1.3e-72 278.1 198 64.6
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 5.3e-69 266.2 341 45.5
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 3.8e-67 260.0 333 46.8
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 1.5e-63 248.1 530 35.3
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 3.1e-61 240.4 219 55.3
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 1.5e-60 238.0 462 34.0
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 7.7e-60 235.7 527 32.4
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 4.1e-53 213.4 180 55.0
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 3.7e-46 190.3 493 28.2
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 1.3e-38 165.2 375 32.5
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 1.8e-29 134.8 195 44.6
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 1.5e-23 115.2 171 39.2
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 3.1e-21 107.5 118 51.7
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 1.2e-20 105.5 115 48.7
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 7.8e-20 102.8 145 40.7
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 1.3e-19 102.1 174 43.1
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 1.1e-18 99.0 145 40.0
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 1.2e-17 95.5 115 47.8
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 2.8e-17 94.4 171 33.9
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 1.2e-12 79.0 122 41.8
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 2.5e-10 71.2 116 40.5


User provided reference genes

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