Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 3.6e-197 691.4 361 100.0
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 1.7e-191 672.5 361 97.5
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 5.6e-190 667.5 361 96.4
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.1e-188 663.3 361 96.7
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 5.8e-187 657.5 361 95.3
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 2.2e-186 655.6 361 95.3
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 2.2e-186 655.6 361 95.3
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 2.2e-186 655.6 361 95.3
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.2e-186 655.6 361 95.3
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 2.2e-186 655.6 361 95.3
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 4.5e-179 631.3 360 91.1
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 2.7e-168 595.5 360 85.0
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 1.8e-167 592.8 360 85.0
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.0e-167 592.0 360 84.7
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 3.9e-167 591.7 360 84.7
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 5.1e-167 591.3 360 84.7
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 6.7e-167 590.9 360 85.6
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 6.7e-167 590.9 360 85.0
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 8.7e-167 590.5 360 84.7
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.1e-166 590.1 360 83.9
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 1.9e-166 589.3 360 84.4
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 5.7e-166 587.8 360 83.9
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 7.4e-166 587.4 359 85.0
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 7.4e-166 587.4 360 84.4
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 9.7e-166 587.0 360 84.2
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 1.3e-165 586.6 360 84.7
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 1.6e-165 586.3 360 84.4
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 6.3e-165 584.3 360 84.4
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 6.3e-165 584.3 360 83.3
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.1e-164 583.6 360 83.6
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 1.4e-164 583.2 360 84.2
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.8e-164 582.8 359 82.2
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 9.0e-164 580.5 360 83.9
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.0e-163 579.3 360 82.8
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 2.6e-163 578.9 360 82.2
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 3.4e-163 578.6 360 83.1
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 1.3e-162 576.6 361 82.5
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 2.9e-162 575.5 360 80.8
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 6.5e-162 574.3 360 82.2
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 6.5e-162 574.3 360 82.2
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.2e-161 571.6 358 83.0
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 7.2e-161 570.9 358 83.0
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 9.4e-161 570.5 360 81.9
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 9.4e-161 570.5 360 82.8
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 2.1e-160 569.3 360 81.9
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 3.6e-160 568.5 360 81.1
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 1.0e-159 567.0 386 77.7
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 2.3e-159 565.8 360 79.4
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 1.5e-158 563.1 360 80.8
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 5.7e-158 561.2 360 80.3
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 7.4e-158 560.8 361 81.4
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 9.7e-158 560.5 360 80.8
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 2.8e-157 558.9 361 78.9
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 6.3e-157 557.8 360 81.1
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 2.4e-156 555.8 318 92.8
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 4.1e-156 555.1 341 84.8
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 6.9e-156 554.3 358 80.2
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 6.9e-156 554.3 360 80.0
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 9.1e-156 553.9 360 80.3
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 2.0e-155 552.7 360 79.4
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 3.4e-155 552.0 358 79.9
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.3e-154 550.1 360 79.7
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 1.7e-154 549.7 358 78.2
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 5.0e-154 548.1 358 78.5
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 5.0e-154 548.1 358 78.5
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 4.2e-153 545.0 362 79.6
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 5.5e-153 544.7 399 73.9
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 7.2e-153 544.3 360 76.7
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 6.1e-152 541.2 352 79.3
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 5.1e-151 538.1 360 77.8
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.7e-149 533.1 360 76.7
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 2.8e-149 532.3 427 69.3
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 3.7e-149 531.9 358 77.4
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 1.1e-148 530.4 352 77.6
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.4e-148 530.0 371 75.2
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 9.1e-148 527.3 360 75.8
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 1.2e-147 526.9 387 72.1
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.0e-147 526.2 360 77.8
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 5.9e-147 524.6 358 75.7
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.3e-146 523.5 360 75.6
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 7.2e-145 517.7 360 75.6
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.6e-144 516.5 359 74.9
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.6e-144 516.5 359 75.2
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.0e-143 511.9 359 73.8
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 5.2e-143 511.5 358 75.4
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.6e-142 509.2 360 74.2
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 3.3e-142 508.8 360 74.7
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 2.0e-139 499.6 318 80.2
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 5.0e-138 495.0 358 71.8
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.2e-136 490.3 317 79.8
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 3.6e-136 488.8 343 74.3
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 7.5e-134 481.1 345 73.6
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.7e-130 469.9 284 83.8
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.7e-130 469.9 359 69.1
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 2.9e-130 469.2 312 76.9
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 9.8e-126 454.1 358 70.1
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 4.5e-123 445.3 331 72.2
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 6.6e-122 441.4 359 63.5
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 1.1e-121 440.7 358 62.3
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 4.7e-120 435.3 260 84.2
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 5.2e-119 431.8 359 62.1
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 2.9e-117 426.0 260 83.8
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 6.0e-107 391.7 281 75.1
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 7.8e-107 391.3 391 54.2
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.9e-98 362.5 297 67.3
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.2e-93 346.7 212 82.5
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.7e-91 339.7 359 51.5
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 6.6e-90 335.1 363 55.4
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 2.8e-88 329.7 353 50.1
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 8.7e-82 308.1 358 46.1
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 3.5e-75 286.2 360 50.3
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.4e-68 264.2 242 64.0
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.4e-63 246.9 358 45.5
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.8e-55 220.7 148 78.4
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 7.6e-54 215.3 143 79.7
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.2e-53 213.8 134 79.9
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.2e-44 183.3 138 67.4
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.2e-35 154.8 104 77.9
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 5.7e-33 146.0 107 76.6
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-28 131.7 86 77.9
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 4.2e-28 129.8 100 71.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 5.3e-23 112.8 73 79.5
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.0e-21 108.6 84 67.9
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 1.7e-16 91.3 54 81.5
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 3.0e-10 70.5 80 48.8
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.7e-08 64.7 38 76.3
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 2.8e-08 63.9 42 71.4


User provided reference genes

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