Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 6.9e-168 594.0 313 100.0
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 1.1e-146 523.5 313 85.0
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 3.3e-146 521.9 313 85.0
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 1.9e-141 506.1 314 86.0
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 1.9e-138 496.1 315 80.0
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 2.5e-138 495.7 314 79.3
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 2.5e-138 495.7 314 79.6
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 7.4e-138 494.2 313 81.8
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 9.7e-138 493.8 314 79.0
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 2.2e-137 492.7 315 79.4
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 2.2e-137 492.7 315 80.0
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 9.7e-130 467.2 307 76.2
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 5.3e-120 434.9 310 69.4
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 1.9e-117 426.4 312 65.7
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 2.5e-117 426.0 275 78.2
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 5.5e-117 424.9 274 78.5
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 1.2e-116 423.7 309 67.3
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.6e-116 423.3 309 67.3
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 2.1e-116 422.9 313 67.4
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 2.7e-116 422.5 311 67.8
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.4e-115 420.2 314 66.6
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 2.3e-115 419.5 309 67.3
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 2.3e-115 419.5 318 65.7
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.9e-115 418.7 314 66.2
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 2.6e-114 416.0 309 65.4
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 3.3e-114 415.6 313 65.5
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 9.7e-114 414.1 312 67.6
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 9.7e-114 414.1 314 65.3
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.3e-113 413.7 311 66.2
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.3e-113 413.7 313 64.2
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 2.8e-113 412.5 313 67.4
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 3.7e-113 412.1 310 66.1
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 3.7e-113 412.1 314 64.6
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 4.8e-113 411.8 314 65.0
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 8.2e-113 411.0 311 66.2
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 1.8e-112 409.8 315 65.1
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 1.8e-112 409.8 312 66.0
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 2.4e-112 409.5 310 65.8
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 3.1e-112 409.1 309 67.3
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 4.1e-112 408.7 312 66.3
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 4.1e-112 408.7 325 63.1
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.2e-111 407.1 309 63.4
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 1.2e-111 407.1 312 64.7
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 2.0e-111 406.4 309 67.0
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.6e-111 406.0 313 64.2
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.6e-111 406.0 311 64.3
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 4.5e-111 405.2 317 68.1
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 4.5e-111 405.2 317 68.1
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 5.9e-111 404.8 299 67.6
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.7e-110 403.3 308 64.3
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.7e-110 403.3 312 63.1
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 2.9e-110 402.5 310 65.5
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 5.0e-110 401.7 317 67.8
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 6.5e-110 401.4 310 65.5
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 8.5e-110 401.0 312 63.5
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.1e-109 400.6 308 64.3
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 1.1e-109 400.6 311 64.0
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 1.5e-109 400.2 312 63.8
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.9e-109 399.8 297 65.0
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.5e-109 399.4 323 61.3
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 2.5e-109 399.4 310 63.2
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 3.2e-109 399.1 309 63.8
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 3.2e-109 399.1 311 64.3
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 9.4e-109 397.5 301 64.5
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 9.4e-109 397.5 310 64.2
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 9.4e-109 397.5 312 63.8
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 1.2e-108 397.1 316 62.3
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 2.1e-108 396.4 314 63.7
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.1e-108 396.4 309 64.1
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 2.1e-108 396.4 314 63.7
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 2.7e-108 396.0 309 62.5
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 2.7e-108 396.0 309 64.1
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 3.6e-108 395.6 316 63.9
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 1.4e-107 393.7 305 65.6
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.8e-107 393.3 311 63.7
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 1.8e-107 393.3 309 64.1
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 5.2e-107 391.7 310 62.9
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 2.6e-106 389.4 312 63.8
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 4.4e-106 388.7 307 63.8
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 5.7e-106 388.3 310 61.6
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.1e-104 384.0 311 60.8
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 3.1e-104 382.5 336 59.2
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 7.0e-104 381.3 306 61.1
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 9.1e-104 380.9 308 61.7
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 4.5e-103 378.6 278 65.5
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 1.3e-102 377.1 336 56.8
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 8.5e-102 374.4 306 60.5
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 8.5e-102 374.4 314 60.2
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 2.1e-100 369.8 313 61.0
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 2.1e-100 369.8 313 61.7
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 3.6e-100 369.0 308 59.7
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 4.7e-100 368.6 306 59.2
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 5.2e-99 365.2 319 58.9
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 5.2e-99 365.2 310 61.3
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 5.0e-94 348.6 329 54.7
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.1e-93 347.4 308 59.7
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.7e-89 333.6 376 49.2
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 2.2e-89 333.2 305 55.4
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 1.8e-88 330.1 305 55.1
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 2.7e-87 326.2 304 54.6
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.0e-86 324.3 305 54.1
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.1e-84 316.6 232 67.2
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 8.0e-84 314.7 298 55.4
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.8e-83 313.5 226 66.4
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 3.3e-77 292.7 235 63.4
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 4.3e-77 292.4 352 46.0
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.0e-70 271.2 236 59.3
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.3e-70 270.8 278 52.9
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.3e-70 270.8 340 49.1
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 3.7e-65 252.7 193 61.1
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 3.9e-62 242.7 178 65.7
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 1.2e-60 237.7 188 63.3
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.7e-54 217.2 207 53.1
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 4.0e-51 206.1 207 52.2
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 7.8e-47 191.8 289 41.2
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 1.6e-44 184.1 155 56.8
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 6.0e-39 165.6 157 53.5
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.8e-38 164.1 321 35.2
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.1e-37 161.4 231 41.1
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.2e-34 151.4 210 43.3
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 2.2e-33 147.1 101 68.3
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 2.1e-28 130.6 124 54.0
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 1.8e-27 127.5 308 33.1
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 3.0e-22 110.2 121 54.5
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 3.9e-22 109.8 164 42.7
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 1.8e-19 100.9 125 52.0
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.5e-18 97.8 148 39.2
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 1.0e-17 95.1 66 66.7
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.0e-17 92.8 62 71.0
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.7e-15 87.0 82 53.7
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 1.8e-14 84.3 116 42.2
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 2.3e-14 84.0 65 58.5
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 7.4e-13 79.0 73 53.4
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 5.3e-11 72.8 88 46.6
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 1.5e-10 71.2 70 55.7
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 2.0e-10 70.9 102 40.2
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 2.6e-10 70.5 131 35.9
A02p37740 Brassica napus HOM05D026193 ORTHO05D028104 1.1e-08 65.1 161 35.4
BraA02t08756Z Brassica rapa HOM05D026193 ORTHO05D028104 1.9e-08 64.3 161 34.8
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 9.4e-08 62.0 60 51.7
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.2e-07 61.6 83 44.6
C02p56830 Brassica napus HOM05D026193 ORTHO05D028104 6.7e-06 55.8 108 35.2


User provided reference genes

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