Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 1.3e-85 320.5 171 100.0
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 4.8e-72 275.4 171 88.9
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 4.8e-72 275.4 171 88.9
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 1.2e-70 270.8 170 85.3
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 8.5e-69 264.6 170 85.9
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 1.4e-68 263.8 171 84.2
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 3.2e-68 262.7 171 83.6
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 9.4e-68 261.2 168 86.9
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 1.8e-66 256.9 163 84.7
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 8.8e-66 254.6 163 84.0
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 8.8e-66 254.6 163 84.0
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 7.4e-65 251.5 166 80.7
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 1.4e-63 247.3 163 82.2
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 5.9e-62 241.9 170 82.4
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 1.0e-61 241.1 161 83.9
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.0e-61 241.1 161 83.9
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.0e-61 241.1 161 83.9
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 1.7e-61 240.4 162 84.6
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 5.7e-57 225.3 162 80.2
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 1.7e-56 223.8 174 77.0
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 2.2e-56 223.4 150 84.7
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 4.1e-55 219.2 171 72.5
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 7.0e-55 218.4 155 81.3
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 9.1e-55 218.0 153 79.1
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 2.6e-54 216.5 153 80.4
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.6e-54 216.5 154 77.9
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 3.5e-54 216.1 140 82.9
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 4.5e-54 215.7 140 85.0
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 4.5e-54 215.7 170 73.5
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 4.5e-54 215.7 147 81.0
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 5.9e-54 215.3 156 77.6
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 5.9e-54 215.3 140 82.9
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 7.7e-54 214.9 140 82.1
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 1.0e-53 214.5 155 77.4
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.0e-53 214.5 157 77.1
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 1.3e-53 214.2 139 83.5
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 1.3e-53 214.2 149 79.9
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.3e-53 214.2 157 77.1
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 1.3e-53 214.2 140 81.4
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 1.7e-53 213.8 137 84.7
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 1.7e-53 213.8 140 82.9
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 2.2e-53 213.4 154 77.9
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 2.2e-53 213.4 157 78.3
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 2.2e-53 213.4 171 72.5
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 2.9e-53 213.0 151 80.1
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.9e-53 213.0 151 80.1
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 2.9e-53 213.0 140 82.1
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 3.8e-53 212.6 140 82.1
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.8e-53 212.6 140 84.3
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 3.8e-53 212.6 155 76.1
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 5.0e-53 212.2 136 84.6
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 5.0e-53 212.2 153 78.4
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 5.0e-53 212.2 149 79.2
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 5.0e-53 212.2 171 72.5
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 5.0e-53 212.2 137 83.2
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 6.5e-53 211.8 169 70.4
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 6.5e-53 211.8 155 77.4
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 6.5e-53 211.8 154 78.6
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 8.5e-53 211.5 139 82.7
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 8.5e-53 211.5 154 76.0
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 1.1e-52 211.1 136 82.4
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.1e-52 211.1 156 76.9
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 1.1e-52 211.1 136 83.1
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 1.4e-52 210.7 171 73.1
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.4e-52 210.7 155 78.7
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 2.5e-52 209.9 152 78.3
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 2.5e-52 209.9 150 80.0
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 3.2e-52 209.5 171 71.3
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 3.2e-52 209.5 150 80.0
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 4.2e-52 209.1 135 83.7
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 4.2e-52 209.1 157 73.9
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 4.2e-52 209.1 139 82.0
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 5.5e-52 208.8 141 80.9
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 7.2e-52 208.4 161 73.9
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 9.4e-52 208.0 158 75.9
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 9.4e-52 208.0 154 77.9
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 9.4e-52 208.0 154 77.3
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.6e-51 207.2 137 81.0
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 1.6e-51 207.2 140 80.7
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 2.1e-51 206.8 171 73.1
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 2.7e-51 206.5 171 70.8
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.7e-51 206.5 151 77.5
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.7e-51 206.5 151 77.5
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 3.6e-51 206.1 157 73.2
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 4.7e-51 205.7 169 72.8
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 4.7e-51 205.7 147 80.3
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 4.7e-51 205.7 166 70.5
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 6.1e-51 205.3 141 81.6
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 6.1e-51 205.3 156 75.6
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 6.1e-51 205.3 151 75.5
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 6.1e-51 205.3 171 69.0
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 6.1e-51 205.3 163 71.8
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 8.0e-51 204.9 153 76.5
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 8.0e-51 204.9 134 83.6
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 1.0e-50 204.5 156 73.7
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 1.0e-50 204.5 157 74.5
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.0e-50 204.5 155 77.4
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 1.0e-50 204.5 156 75.6
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 1.4e-50 204.1 156 75.0
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 1.4e-50 204.1 156 75.0
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.8e-50 203.8 173 69.9
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.8e-50 203.8 140 77.1
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 2.3e-50 203.4 174 69.0
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 2.3e-50 203.4 155 74.8
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 3.0e-50 203.0 156 76.3
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 3.0e-50 203.0 150 78.7
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 3.0e-50 203.0 157 72.6
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 3.9e-50 202.6 155 77.4
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.2e-50 202.2 173 69.9
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 6.7e-50 201.8 140 78.6
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 6.7e-50 201.8 151 78.1
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 6.7e-50 201.8 173 69.4
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 6.7e-50 201.8 164 72.6
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 3.3e-49 199.5 139 78.4
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 4.4e-49 199.1 154 76.0
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 4.4e-49 199.1 169 69.2
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 4.4e-49 199.1 169 69.2
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 1.3e-48 197.6 155 72.9
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 6.3e-48 195.3 157 73.2
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 6.3e-48 195.3 150 76.0
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 3.1e-47 193.0 170 66.5
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 4.1e-47 192.6 140 76.4
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 5.3e-47 192.2 160 70.6
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 9.1e-47 191.4 138 76.8
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.6e-46 190.7 153 72.5
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 5.9e-46 188.7 130 77.7
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.0e-45 188.0 164 67.1
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 2.9e-45 186.4 178 65.7
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 3.8e-45 186.0 170 65.3
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 3.8e-45 186.0 130 76.2
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 3.2e-44 183.0 130 75.4
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 5.5e-44 182.2 157 70.1
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 3.0e-42 176.4 157 61.8
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 2.0e-41 173.7 133 70.7
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.0e-37 161.4 120 75.8
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 5.0e-37 159.1 149 62.4
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.5e-36 157.5 123 74.0
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 9.8e-33 144.8 111 68.5
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 1.3e-32 144.4 133 61.7
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 5.9e-30 135.6 128 57.8
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 7.7e-30 135.2 109 67.0
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.5e-28 131.0 171 55.0
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 2.5e-28 130.2 82 89.0
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 5.2e-26 122.5 116 62.1
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 4.9e-24 115.9 111 58.6
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 2.0e-22 110.5 101 60.4
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 8.6e-21 105.1 103 58.3
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 4.3e-20 102.8 67 86.6
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 4.3e-20 102.8 67 86.6
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 1.6e-19 100.9 87 67.8
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 5.8e-17 92.4 69 78.3
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 6.4e-16 89.0 72 69.4
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.1e-15 88.2 106 53.8
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.4e-15 87.8 66 80.3
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.6e-14 84.3 64 76.6
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 1.2e-06 58.2 61 44.3


User provided reference genes

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