Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR181930 Cardamine hirsuta HOM05D006392 ORTHO05D008010 2.7e-123 445.3 218 100.0
AL8G18870 Arabidopsis lyrata HOM05D006392 ORTHO05D008010 5.9e-110 401.0 218 87.2
AT5G42470 Arabidopsis thaliana HOM05D006392 ORTHO05D008010 5.0e-109 397.9 218 87.2
BcaC06g31757 Brassica carinata HOM05D006392 ORTHO05D008010 6.8e-106 387.5 218 84.4
A06p48320 Brassica napus HOM05D006392 ORTHO05D008010 1.2e-105 386.7 218 84.4
BraA06t27702Z Brassica rapa HOM05D006392 ORTHO05D008010 2.0e-105 386.0 218 84.4
Carub.0008s0658 Capsella rubella HOM05D006392 ORTHO05D008010 2.0e-105 386.0 218 83.9
BcaC02g10765 Brassica carinata HOM05D006392 ORTHO05D008010 5.7e-105 384.4 218 83.5
C04p25370 Brassica napus HOM05D006392 ORTHO05D008010 5.7e-105 384.4 218 83.5
BolC4t24044H Brassica oleracea HOM05D006392 ORTHO05D008010 5.7e-105 384.4 218 83.5
Aa31LG9G12590 Aethionema arabicum HOM05D006392 ORTHO05D008010 8.3e-104 380.6 216 84.3
Sp7g07860 Schrenkiella parvula HOM05D006392 ORTHO05D008010 8.3e-104 380.6 217 83.4
Thhalv10003229m.g Eutrema salsugineum HOM05D006392 ORTHO05D008010 3.2e-103 378.6 216 83.3
THA.LOC104809190 Tarenaya hassleriana HOM05D006392 ORTHO05D008010 5.0e-93 344.7 217 76.0
Prupe.1G364700 Prunus persica HOM05D006392 ORTHO05D008010 1.1e-87 327.0 218 67.9
Cpa.g.sc26.51 Carica papaya HOM05D006392 ORTHO05D008010 4.1e-87 325.1 218 69.7
TWI56G0581 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 7.1e-87 324.3 218 67.9
Gorai.002G123300 Gossypium raimondii HOM05D006392 ORTHO05D008010 2.1e-86 322.8 218 67.4
Sabra05G0185500 Salix brachista HOM05D006392 ORTHO05D008010 2.1e-86 322.8 218 68.8
CiPaw.07G149200 Carya illinoinensis HOM05D006392 ORTHO05D008010 1.3e-85 320.1 218 67.4
Gohir.A01G111000 Gossypium hirsutum HOM05D006392 ORTHO05D008010 1.7e-85 319.7 218 66.5
QL02p011683 Quercus lobata HOM05D006392 ORTHO05D008010 3.9e-85 318.5 218 68.3
GSVIVG01009916001 Vitis vinifera HOM05D006392 ORTHO05D008010 5.1e-85 318.2 216 69.0
Gohir.D01G097700 Gossypium hirsutum HOM05D006392 ORTHO05D008010 6.6e-85 317.8 218 66.5
Duzib093G0848 Durio zibethinus HOM05D006392 ORTHO05D008010 8.6e-85 317.4 218 66.1
Potri.002G021700 Populus trichocarpa HOM05D006392 ORTHO05D008010 8.6e-85 317.4 218 67.4
Potri.005G240000 Populus trichocarpa HOM05D006392 ORTHO05D008010 8.6e-85 317.4 218 67.4
CsaV3_3G045910 Cucumis sativus L. HOM05D006392 ORTHO05D008010 1.9e-84 316.2 217 66.8
Haze_22639 Corylus avellana HOM05D006392 ORTHO05D008010 2.5e-84 315.8 218 68.3
Thecc.08G045200 Theobroma cacao HOM05D006392 ORTHO05D008010 7.3e-84 314.3 218 67.0
Lalb_Chr20g0119891 Lupinus albus HOM05D006392 ORTHO05D008010 1.2e-83 313.5 217 66.4
Eucgr.F01664 Eucalyptus grandis HOM05D006392 ORTHO05D008010 1.1e-82 310.5 217 66.4
TAR628G0005 Trochodendron aralioides HOM05D006392 ORTHO05D008010 1.4e-82 310.1 215 67.4
MD15G1011700 Malus domestica HOM05D006392 ORTHO05D008010 1.8e-82 309.7 218 65.6
CSS0006206 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 4.0e-82 308.5 216 67.1
CSS0012189 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 4.0e-82 308.5 216 67.1
MD08G1012700 Malus domestica HOM05D006392 ORTHO05D008010 5.2e-82 308.1 218 65.1
Sed0018359 Sechium edule HOM05D006392 ORTHO05D008010 6.8e-82 307.8 217 65.0
Ciclev10001496m.g Citrus clementina HOM05D006392 ORTHO05D008010 3.4e-81 305.4 217 66.8
Sabra02G0018100 Salix brachista HOM05D006392 ORTHO05D008010 4.4e-81 305.1 218 65.1
MD11G1014100 Malus domestica HOM05D006392 ORTHO05D008010 5.8e-81 304.7 218 64.2
Ca_07152_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 7.6e-81 304.3 216 64.8
Ca_00791_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 9.9e-81 303.9 216 65.3
Lj4C23T1 Lonicera japonica HOM05D006392 ORTHO05D008010 9.9e-81 303.9 216 66.7
FvH4_2g38390 Fragaria vesca HOM05D006392 ORTHO05D008010 1.3e-80 303.5 213 66.7
Medtr2g029040 Medicago truncatula HOM05D006392 ORTHO05D008010 2.2e-80 302.8 216 66.2
Lj6g0002207 Lotus japonicus HOM05D006392 ORTHO05D008010 2.9e-80 302.4 212 65.6
Actinidia35835 Actinidia chinensis HOM05D006392 ORTHO05D008010 3.8e-80 302.0 216 66.2
arahy.Tifrunner.gnm1.ann1.8AJY4P Arachis hypogaea HOM05D006392 ORTHO05D008010 3.8e-80 302.0 227 63.9
arahy.Tifrunner.gnm1.ann1.GAE5DS Arachis hypogaea HOM05D006392 ORTHO05D008010 3.8e-80 302.0 227 63.9
RcHm_v2.0_Chr6g0302911 Rosa chinensis HOM05D006392 ORTHO05D008010 6.4e-80 301.2 213 67.1
CAN.G311.35 Capsicum annuum HOM05D006392 ORTHO05D008010 1.9e-79 299.7 218 63.3
Glyma.09G103100 Glycine max HOM05D006392 ORTHO05D008010 2.4e-79 299.3 216 63.4
Solyc04g081500.3 Solanum lycopersicum HOM05D006392 ORTHO05D008010 4.1e-79 298.5 218 63.3
VMungo1080G0965 Vigna mungo HOM05D006392 ORTHO05D008010 4.1e-79 298.5 216 63.9
TPR.G17497 Trifolium pratense HOM05D006392 ORTHO05D008010 5.4e-79 298.1 216 65.3
CANSAT25G2040 Cannabis sativa HOM05D006392 ORTHO05D008010 9.2e-79 297.4 218 62.8
Phvul.005G022200 Phaseolus vulgaris HOM05D006392 ORTHO05D008010 1.2e-78 297.0 216 64.4
Rhsim06G0021200 Rhododendron simsii HOM05D006392 ORTHO05D008010 1.2e-78 297.0 216 63.9
Sopen04g035110 Solanum pennellii HOM05D006392 ORTHO05D008010 1.6e-78 296.6 218 63.3
PGSC0003DMG400009939 Solanum tuberosum HOM05D006392 ORTHO05D008010 1.6e-78 296.6 218 63.3
ECA233G3412 Erigeron canadensis HOM05D006392 ORTHO05D008010 2.1e-78 296.2 217 63.1
Hma1.2p1_0638F.1_g193900 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 2.1e-78 296.2 214 65.0
AUR62033899 Chenopodium quinoa HOM05D006392 ORTHO05D008010 3.5e-78 295.4 215 64.7
PGR083G2660 Punica granatum HOM05D006392 ORTHO05D008010 3.5e-78 295.4 216 66.2
HanXRQChr13g0387101 Helianthus annuus HOM05D006392 ORTHO05D008010 4.6e-78 295.0 219 63.0
Glyma.15G275100 Glycine max HOM05D006392 ORTHO05D008010 1.3e-77 293.5 216 62.5
TWI36G0533 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 1.3e-77 293.5 201 66.7
Actinidia21265 Actinidia chinensis HOM05D006392 ORTHO05D008010 2.3e-77 292.7 216 64.8
MSTRG.1188 Avicennia marina HOM05D006392 ORTHO05D008010 3.0e-77 292.4 213 64.8
ATR0810G120 Amborella trichopoda HOM05D006392 ORTHO05D008010 3.9e-77 292.0 219 60.7
Aqoxy6G00284_Aqoxy6G00285 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 2.5e-76 289.3 216 64.4
PSO675G2043 Papaver somniferum HOM05D006392 ORTHO05D008010 2.8e-75 285.8 218 62.4
SalBow7G2189 Salvia bowleyana HOM05D006392 ORTHO05D008010 2.4e-74 282.7 215 61.9
PSO541G2958 Papaver somniferum HOM05D006392 ORTHO05D008010 4.0e-74 282.0 218 61.5
Migut.C00843 Erythranthe guttata HOM05D006392 ORTHO05D008010 1.2e-73 280.4 215 61.4
SGA_v2.0_scaffold11G05922 Striga asiatica HOM05D006392 ORTHO05D008010 6.4e-72 274.6 213 59.6
Manes.05G146900 Manihot esculenta HOM05D006392 ORTHO05D008010 8.4e-72 274.2 217 60.8
Lsat_1_v5_gn_8_30701 Lactuca sativa HOM05D006392 ORTHO05D008010 4.2e-71 271.9 219 58.9
EL10Ac1g02188 Beta vulgaris HOM05D006392 ORTHO05D008010 1.2e-70 270.4 196 64.3
Oeu014179.1 Olea europaea HOM05D006392 ORTHO05D008010 1.2e-70 270.4 215 59.1
DCAR_023015 Daucus carota HOM05D006392 ORTHO05D008010 3.5e-70 268.9 217 59.0
Cfa013957 Carpinus fangiana HOM05D006392 ORTHO05D008010 6.0e-70 268.1 218 61.5
Os06g0715600 Oryza sativa ssp. japonica HOM05D006392 ORTHO05D008010 3.9e-69 265.4 217 57.6
Duzib116G0836 Durio zibethinus HOM05D006392 ORTHO05D008010 8.7e-69 264.2 185 64.9
FAN20G2474 Fragaria x ananassa HOM05D006392 ORTHO05D008010 1.5e-68 263.5 213 60.6
FAN15G0959 Fragaria x ananassa HOM05D006392 ORTHO05D008010 1.9e-68 263.1 213 60.1
FAN27G1073 Fragaria x ananassa HOM05D006392 ORTHO05D008010 1.6e-67 260.0 213 59.6
Zm00001eb228060 Zea mays HOM05D006392 ORTHO05D008010 2.0e-65 253.1 220 55.0
CDE04G0374 Ceratophyllum demersum HOM05D006392 ORTHO05D008010 7.6e-65 251.1 196 60.7
Peaxi162Scf00438g00835 Petunia axillaris HOM05D006392 ORTHO05D008010 9.9e-65 250.8 218 56.4
Nitab4.5_0013390g0010 Nicotiana tabacum HOM05D006392 ORTHO05D008010 1.3e-64 250.4 185 61.6
AUR62041903 Chenopodium quinoa HOM05D006392 ORTHO05D008010 1.1e-63 247.3 182 62.6
SEGI_16132 Sequoiadendron giganteum HOM05D006392 ORTHO05D008010 2.7e-62 242.7 217 50.7
Cc10_g01630 Coffea canephora HOM05D006392 ORTHO05D008010 3.5e-62 242.3 183 60.1
HPP92_024091 Vanilla planifolia HOM05D006392 ORTHO05D008010 1.9e-60 236.5 184 62.0
Hund05186 Selenicereus undatus HOM05D006392 ORTHO05D008010 9.6e-60 234.2 184 61.4
MBI05_g07507_MAGBIO Magnolia biondii HOM05D006392 ORTHO05D008010 1.6e-59 233.4 196 58.2
Psat1g169520 Pisum sativum HOM05D006392 ORTHO05D008010 1.6e-59 233.4 165 70.3
Nn1g05904 Nelumbo nucifera HOM05D006392 ORTHO05D008010 1.2e-57 227.3 216 51.9
MELO3C030484.2 Cucumis melo HOM05D006392 ORTHO05D008010 4.2e-55 218.8 187 57.2
Sc02g0008600 Simmondsia chinensis HOM05D006392 ORTHO05D008010 9.3e-55 217.6 163 63.8
Dinv31849 Davidia involucrata HOM05D006392 ORTHO05D008010 2.5e-52 209.5 143 71.3
Eucgr.F02661 Eucalyptus grandis HOM05D006392 ORTHO05D008010 5.3e-50 201.8 142 68.3
Hma1.2p1_0638F.1_g193910 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 3.8e-48 195.7 237 46.0
Mapoly0064s0103 Marchantia polymorpha HOM05D006392 ORTHO05D008010 3.8e-48 195.7 219 45.2
SMO196G0156 Selaginella moellendorffii HOM05D006392 ORTHO05D008010 7.9e-46 188.0 188 46.8
COL.COLO4_26140 Corchorus olitorius HOM05D006392 ORTHO05D008010 6.7e-45 184.9 123 70.7
Pp3c4_9730 Physcomitrium patens HOM05D006392 ORTHO05D008010 6.7e-45 184.9 223 43.9
Aqoxy4G01015 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 1.3e-40 170.6 123 65.9
AagrBONN_evm.TU.Sc2ySwM_117.3435 Anthoceros agrestis HOM05D006392 ORTHO05D008010 1.4e-39 167.2 162 50.0
vmacro07583 Vaccinium macrocarpon HOM05D006392 ORTHO05D008010 5.1e-37 158.7 140 54.3
unitig_32.g11136 Utricularia gibba HOM05D006392 ORTHO05D008010 3.1e-34 149.4 122 56.6
CBR_g23034 Chara braunii HOM05D006392 ORTHO05D008010 2.2e-32 143.3 230 34.8
Actinidia16990 Actinidia chinensis HOM05D006392 ORTHO05D004187 1.5e-28 130.6 93 64.5
Atru.chr13.285 Acer truncatum HOM05D006392 ORTHO05D008010 1.4e-26 124.0 178 42.7
RcHm_v2.0_Chr4g0398161 Rosa chinensis HOM05D006392 ORTHO05D008010 1.4e-26 124.0 95 65.3
ClCG05G018230 Citrullus lanatus HOM05D006392 ORTHO05D008010 5.7e-12 75.5 49 59.2
Cre09.g401367 Chlamydomonas reinhardtii HOM05D006392 ORTHO05D008010 2.4e-10 70.1 139 31.7
Cc10_g01620 Coffea canephora HOM05D006392 ORTHO05D008010 3.6e-06 56.2 34 73.5


User provided reference genes

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