Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR180010 Cardamine hirsuta HOM05D001004 ORTHO05D000653 5.1e-25 117.1 65 100.0
CARHR180030 Cardamine hirsuta HOM05D001004 ORTHO05D000653 4.5e-21 104.0 65 78.5
Carub.0008s0504 Capsella rubella HOM05D001004 ORTHO05D000653 1.7e-20 102.1 63 77.8
Thhalv10003303m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 2.9e-20 101.3 65 78.5
Carub.0008s0507 Capsella rubella HOM05D001004 ORTHO05D000653 3.8e-20 100.9 65 78.5
Sp2g08400 Schrenkiella parvula HOM05D001004 ORTHO05D000653 3.8e-20 100.9 65 80.0
AL8G16730 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 4.2e-19 97.4 65 75.4
BolC7t43147H Brassica oleracea HOM05D001004 ORTHO05D000653 9.3e-19 96.3 65 75.4
BraA06t27650Z Brassica rapa HOM05D001004 ORTHO05D000653 9.3e-19 96.3 65 75.4
AT5G43570 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 1.2e-18 95.9 61 77.0
A06p47800 Brassica napus HOM05D001004 ORTHO05D000653 4.6e-18 94.0 65 73.8
BcaC06g31688 Brassica carinata HOM05D001004 ORTHO05D000653 2.3e-17 91.7 65 70.8
THA.LOC104805628 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 1.3e-12 75.9 64 60.9
Aa31LG5G3620 Aethionema arabicum HOM05D001004 ORTHO05D000653 2.9e-12 74.7 64 56.2
Sp2g08390 Schrenkiella parvula HOM05D001004 ORTHO05D000653 1.1e-11 72.8 64 56.2
Carub.0008s0505 Capsella rubella HOM05D001004 ORTHO05D000653 1.4e-11 72.4 64 54.7
Carub.0008s0506 Capsella rubella HOM05D001004 ORTHO05D000653 1.4e-11 72.4 64 54.7
BcaC06g34643 Brassica carinata HOM05D001004 ORTHO05D000653 2.5e-11 71.6 50 70.0
AT5G43580 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 3.2e-11 71.2 64 54.7
Hma1.2p1_0310F.1_g120850 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 5.5e-11 70.5 64 57.8
Thhalv10003305m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 2.1e-10 68.6 64 53.1
BcaC06g30596 Brassica carinata HOM05D001004 ORTHO05D000653 3.5e-10 67.8 65 60.0
Gorai.009G312600 Gossypium raimondii HOM05D001004 ORTHO05D000653 6.1e-10 67.0 64 57.8
Thhalv10003342m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 1.0e-09 66.2 65 52.3
HanXRQChr01g0014521 Helianthus annuus HOM05D001004 ORTHO05D000653 1.0e-09 66.2 64 50.0
HanXRQChr13g0424371 Helianthus annuus HOM05D001004 ORTHO05D000653 1.3e-09 65.9 64 53.1
Hma1.2p1_0310F.1_g120940 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 1.8e-09 65.5 64 54.7
MBI04_g22609_MAGBIO Magnolia biondii HOM05D001004 ORTHO05D000653 3.0e-09 64.7 64 51.6
Duzib114G0743 Durio zibethinus HOM05D001004 ORTHO05D000653 8.7e-09 63.2 64 51.6
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 8.7e-09 63.2 64 50.0
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 8.7e-09 63.2 64 50.0
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 8.7e-09 63.2 64 50.0
Ciclev10023822m.g Citrus clementina HOM05D001004 ORTHO05D000653 1.5e-08 62.4 64 53.1
Dinv44644 Davidia involucrata HOM05D001004 ORTHO05D000653 1.9e-08 62.0 64 51.6
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 1.9e-08 62.0 64 50.0
CARHR180000 Cardamine hirsuta HOM05D001004 ORTHO05D000653 2.5e-08 61.6 64 50.0
Hma1.2p1_0310F.1_g120950 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 2.5e-08 61.6 64 51.6
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 2.5e-08 61.6 64 50.0
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 3.3e-08 61.2 64 50.0
FvH4_4g02860 Fragaria vesca HOM05D001004 ORTHO05D000653 5.7e-08 60.5 60 48.3
Actinidia08436 Actinidia chinensis HOM05D001004 ORTHO05D000653 7.4e-08 60.1 64 46.9
FAN12G2763 Fragaria x ananassa HOM05D001004 ORTHO05D000653 9.7e-08 59.7 60 48.3
Gohir.A11G128500 Gossypium hirsutum HOM05D001004 ORTHO05D000653 9.7e-08 59.7 64 50.0
GSVIVG01018141001 Vitis vinifera HOM05D001004 ORTHO05D000653 9.7e-08 59.7 64 48.4
ClCG05G004540 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.3e-07 59.3 65 50.8
ECA238G0152 Erigeron canadensis HOM05D001004 ORTHO05D000653 1.3e-07 59.3 64 43.8
Lj5g0018869 Lotus japonicus HOM05D001004 ORTHO05D000653 1.3e-07 59.3 64 45.3
SalBow6G2951 Salvia bowleyana HOM05D001004 ORTHO05D000653 1.3e-07 59.3 64 46.9
Atru.chr4.2205 Acer truncatum HOM05D001004 ORTHO05D000653 2.2e-07 58.5 64 46.9
Cc03_g04970 Coffea canephora HOM05D001004 ORTHO05D000653 2.2e-07 58.5 64 46.9
Peaxi162Scf00325g00711 Petunia axillaris HOM05D001004 ORTHO05D000653 2.2e-07 58.5 64 45.3
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 2.2e-07 58.5 64 51.6
Potri.011G110400 Populus trichocarpa HOM05D001004 ORTHO05D000653 2.2e-07 58.5 64 51.6
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 2.2e-07 58.5 64 48.4
TWI18G1440 Tripterygium wilfordii HOM05D001004 ORTHO05D000653 2.2e-07 58.5 64 46.9
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 2.8e-07 58.2 64 46.9
HanXRQChr13g0424341 Helianthus annuus HOM05D001004 ORTHO05D000653 2.8e-07 58.2 64 46.9
HanXRQChr13g0424351 Helianthus annuus HOM05D001004 ORTHO05D000653 2.8e-07 58.2 64 45.3
Hma1.2p1_0650F.1_g195520 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 2.8e-07 58.2 60 50.0
Lj5g0009601 Lotus japonicus HOM05D001004 ORTHO05D000653 2.8e-07 58.2 64 48.4
CsaV3_3G012540 Cucumis sativus L. HOM05D001004 ORTHO05D000653 3.7e-07 57.8 64 48.4
Migut.D00398 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.7e-07 57.8 60 46.7
Eucgr.H05137 Eucalyptus grandis HOM05D001004 ORTHO05D000653 3.7e-07 57.8 64 43.8
HanXRQChr01g0007331 Helianthus annuus HOM05D001004 ORTHO05D000653 3.7e-07 57.8 60 48.3
Lsat_1_v5_gn_3_123400 Lactuca sativa HOM05D001004 ORTHO05D000653 3.7e-07 57.8 64 46.9
MD13G1208300 Malus domestica HOM05D001004 ORTHO05D000653 3.7e-07 57.8 64 46.9
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 3.7e-07 57.8 64 48.4
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 3.7e-07 57.8 64 48.4
Gorai.007G143400 Gossypium raimondii HOM05D001004 ORTHO05D000653 4.8e-07 57.4 64 48.4
Phvul.007G125500 Phaseolus vulgaris HOM05D001004 ORTHO05D000653 4.8e-07 57.4 64 46.9
Thecc.01G264300 Theobroma cacao HOM05D001004 ORTHO05D000653 4.8e-07 57.4 64 50.0
Atru.chr4.2208 Acer truncatum HOM05D001004 ORTHO05D000653 6.3e-07 57.0 64 45.3
EL10Ac5g10439 Beta vulgaris HOM05D001004 ORTHO05D000653 6.3e-07 57.0 63 46.0
COL.COLO4_05579 Corchorus olitorius HOM05D001004 ORTHO05D000653 6.3e-07 57.0 64 42.2
COL.COLO4_12152 Corchorus olitorius HOM05D001004 ORTHO05D000653 6.3e-07 57.0 65 49.2
Eucgr.C02276 Eucalyptus grandis HOM05D001004 ORTHO05D000653 6.3e-07 57.0 64 42.2
Thhalv10017502m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 6.3e-07 57.0 64 45.3
FAN17G0682 Fragaria x ananassa HOM05D001004 ORTHO05D000653 6.3e-07 57.0 60 46.7
FAN17G1164 Fragaria x ananassa HOM05D001004 ORTHO05D000653 6.3e-07 57.0 60 46.7
Sabra11G0097900 Salix brachista HOM05D001004 ORTHO05D000653 6.3e-07 57.0 64 51.6
Sabra11G0098000 Salix brachista HOM05D001004 ORTHO05D000653 6.3e-07 57.0 64 51.6
SalBow6G4720 Salvia bowleyana HOM05D001004 ORTHO05D000653 6.3e-07 57.0 64 50.0
DCAR_011990 Daucus carota HOM05D001004 ORTHO05D000653 8.2e-07 56.6 64 45.3
HanXRQChr01g0007291 Helianthus annuus HOM05D001004 ORTHO05D000653 8.2e-07 56.6 65 50.8
ClCG05G004550 Citrullus lanatus HOM05D001004 ORTHO05D000653 1.1e-06 56.2 65 46.2
PSO384G3535 Papaver somniferum HOM05D001004 ORTHO05D000653 1.1e-06 56.2 64 46.9
TAR636G3448 Trochodendron aralioides HOM05D001004 ORTHO05D000653 1.1e-06 56.2 64 46.9
arahy.Tifrunner.gnm1.ann1.AUM5GA Arachis hypogaea HOM05D001004 ORTHO05D000653 1.4e-06 55.8 64 45.3
BcaB07g30343 Brassica carinata HOM05D001004 ORTHO05D000653 1.4e-06 55.8 64 46.9
BcaC02g07440 Brassica carinata HOM05D001004 ORTHO05D000653 1.4e-06 55.8 64 45.3
C04p66930 Brassica napus HOM05D001004 ORTHO05D000653 1.4e-06 55.8 64 45.3
BolC4t28194H Brassica oleracea HOM05D001004 ORTHO05D000653 1.4e-06 55.8 64 45.3
CSS0007138 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 1.4e-06 55.8 64 46.9
MELO3C006464.2 Cucumis melo HOM05D001004 ORTHO05D000653 1.4e-06 55.8 65 49.2
HanXRQChr01g0005211 Helianthus annuus HOM05D001004 ORTHO05D000653 1.4e-06 55.8 61 45.9
Hma1.2p1_0310F.1_g120880 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 1.4e-06 55.8 65 46.2
Lalb_Chr02g0150361 Lupinus albus HOM05D001004 ORTHO05D000653 1.4e-06 55.8 65 49.2
Lalb_Chr21g0312271 Lupinus albus HOM05D001004 ORTHO05D000653 1.4e-06 55.8 64 48.4
Potri.010G075600 Populus trichocarpa HOM05D001004 ORTHO05D000653 1.4e-06 55.8 64 46.9
Sed0011759 Sechium edule HOM05D001004 ORTHO05D000653 1.4e-06 55.8 65 49.2
A04p14760 Brassica napus HOM05D001004 ORTHO05D000653 1.8e-06 55.5 66 43.9
CSS0028717 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 1.8e-06 55.5 64 45.3
CiPaw.01G189600 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.8e-06 55.5 64 46.9
COL.COLO4_12160 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.8e-06 55.5 65 46.2
Eucgr.H05126 Eucalyptus grandis HOM05D001004 ORTHO05D000653 1.8e-06 55.5 64 39.1
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.8e-06 55.5 64 45.3
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.8e-06 55.5 64 45.3
HanXRQChr01g0007401 Helianthus annuus HOM05D001004 ORTHO05D000653 1.8e-06 55.5 60 46.7
Lalb_Chr02g0150371 Lupinus albus HOM05D001004 ORTHO05D000653 1.8e-06 55.5 65 44.6
Potri.010G075200 Populus trichocarpa HOM05D001004 ORTHO05D000653 1.8e-06 55.5 64 46.9
SalBow6G5398 Salvia bowleyana HOM05D001004 ORTHO05D000653 1.8e-06 55.5 64 45.3
THA.LOC109117082 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 1.8e-06 55.5 64 42.2
TPR.G31259 Trifolium pratense HOM05D001004 ORTHO05D000653 1.8e-06 55.5 64 45.3
COL.COLO4_12159 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.4e-06 55.1 64 45.3
MELO3C029118.2 Cucumis melo HOM05D001004 ORTHO05D000653 2.4e-06 55.1 62 46.8
HanXRQChr01g0005401 Helianthus annuus HOM05D001004 ORTHO05D000653 2.4e-06 55.1 64 46.9
HanXRQChr01g0005421 Helianthus annuus HOM05D001004 ORTHO05D000653 2.4e-06 55.1 60 46.7
HanXRQChr01g0005431 Helianthus annuus HOM05D001004 ORTHO05D000653 2.4e-06 55.1 60 46.7
Atru.chr4.2204 Acer truncatum HOM05D001004 ORTHO05D000653 3.1e-06 54.7 64 45.3
A04p29640 Brassica napus HOM05D001004 ORTHO05D000653 3.1e-06 54.7 64 43.8
BraA04t18430Z Brassica rapa HOM05D001004 ORTHO05D000653 3.1e-06 54.7 64 43.8
CSS0013364 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 3.1e-06 54.7 64 45.3
Lsat_1_v5_gn_3_122520 Lactuca sativa HOM05D001004 ORTHO05D000653 3.1e-06 54.7 64 45.3
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 3.1e-06 54.7 64 46.9
Sabra10G0033000 Salix brachista HOM05D001004 ORTHO05D000653 3.1e-06 54.7 64 43.8
THA.LOC104824172 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 3.1e-06 54.7 64 42.2
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 4.1e-06 54.3 64 46.9
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 4.1e-06 54.3 64 43.8
MELO3C031670.2 Cucumis melo HOM05D001004 ORTHO05D000653 4.1e-06 54.3 65 43.1
Glyma.20G205700 Glycine max HOM05D001004 ORTHO05D000653 4.1e-06 54.3 64 45.3
Glyma.20G205900 Glycine max HOM05D001004 ORTHO05D000653 4.1e-06 54.3 64 43.8
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 4.1e-06 54.3 64 45.3
HanXRQChr01g0014551 Helianthus annuus HOM05D001004 ORTHO05D000653 4.1e-06 54.3 64 45.3
Nitab4.5_0000302g0080 Nicotiana tabacum HOM05D001004 ORTHO05D000653 4.1e-06 54.3 64 46.9
Potri.005G221000 Populus trichocarpa HOM05D001004 ORTHO05D000653 4.1e-06 54.3 62 45.2
Sabra10G0033200 Salix brachista HOM05D001004 ORTHO05D000653 4.1e-06 54.3 62 43.5
Sabra10G0033400 Salix brachista HOM05D001004 ORTHO05D000653 4.1e-06 54.3 62 43.5
Sabra10G0033600 Salix brachista HOM05D001004 ORTHO05D000653 4.1e-06 54.3 64 43.8
DCAR_024231 Daucus carota HOM05D001004 ORTHO05D000653 5.3e-06 53.9 64 45.3
Gohir.A05G281850 Gossypium hirsutum HOM05D001004 ORTHO05D000653 5.3e-06 53.9 64 42.2
Gohir.D11G134150 Gossypium hirsutum HOM05D001004 ORTHO05D000653 5.3e-06 53.9 64 48.4
HanXRQChr01g0007271 Helianthus annuus HOM05D001004 ORTHO05D000653 5.3e-06 53.9 60 45.0
Manes.15G037300 Manihot esculenta HOM05D001004 ORTHO05D000653 5.3e-06 53.9 64 48.4
Nn1g02639 Nelumbo nucifera HOM05D001004 ORTHO05D000653 5.3e-06 53.9 64 46.9
QL06p015886 Quercus lobata HOM05D001004 ORTHO05D000653 5.3e-06 53.9 63 44.4
Sp4g21250 Schrenkiella parvula HOM05D001004 ORTHO05D000653 5.3e-06 53.9 64 45.3
Actinidia08437 Actinidia chinensis HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 43.8
arahy.Tifrunner.gnm1.ann1.M1DDN9 Arachis hypogaea HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 42.2
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 43.8
Ciclev10007123m.g Citrus clementina HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 43.8
CsaV3_7G026940 Cucumis sativus L. HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 45.3
DCAR_024232 Daucus carota HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 45.3
DCAR_027284 Daucus carota HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 45.3
ECA248G1252 Erigeron canadensis HOM05D001004 ORTHO05D000653 6.9e-06 53.5 60 45.0
FAN17G0323 Fragaria x ananassa HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 46.9
FAN17G0556 Fragaria x ananassa HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 46.9
FAN17G2832 Fragaria x ananassa HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 46.9
Glyma.13G120600 Glycine max HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 42.2
HanXRQChr01g0007351 Helianthus annuus HOM05D001004 ORTHO05D000653 6.9e-06 53.5 65 49.2
HanXRQChr13g0424391 Helianthus annuus HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 43.8
Hma1.2p1_0310F.1_g120860 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 43.8
MD16G1210400 Malus domestica HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 43.8
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 42.2
TPR.G31261 Trifolium pratense HOM05D001004 ORTHO05D000653 6.9e-06 53.5 64 45.3
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 9.0e-06 53.1 64 46.9
COL.COLO4_12153 Corchorus olitorius HOM05D001004 ORTHO05D000653 9.0e-06 53.1 65 46.2
Eucgr.B01966 Eucalyptus grandis HOM05D001004 ORTHO05D000653 9.0e-06 53.1 62 46.8
FAN17G2232 Fragaria x ananassa HOM05D001004 ORTHO05D000653 9.0e-06 53.1 64 46.9
HanXRQChr13g0424431 Helianthus annuus HOM05D001004 ORTHO05D000653 9.0e-06 53.1 64 43.8
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 9.0e-06 53.1 64 42.2
PGR102G1734 Punica granatum HOM05D001004 ORTHO05D000653 9.0e-06 53.1 64 42.2
SalBow6G2779 Salvia bowleyana HOM05D001004 ORTHO05D000653 9.0e-06 53.1 64 45.3
SalBow6G3365 Salvia bowleyana HOM05D001004 ORTHO05D000653 9.0e-06 53.1 64 45.3
Sed0013106 Sechium edule HOM05D001004 ORTHO05D000653 9.0e-06 53.1 65 46.2


User provided reference genes

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