Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 1.2e-103 379.8 190 100.0
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 1.8e-62 243.0 185 67.0
CARHR178520 Cardamine hirsuta HOM05D013394 ORTHO05D009712 2.2e-60 236.1 177 67.2
Carub.0001s0870 Capsella rubella HOM05D013394 ORTHO05D009712 1.9e-56 223.0 188 61.2
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 3.1e-46 189.1 189 53.4
Sp1g07970 Schrenkiella parvula HOM05D013394 ORTHO05D009712 7.6e-45 184.5 168 56.0
C05p07340 Brassica napus HOM05D013394 ORTHO05D009712 1.1e-43 180.6 186 51.6
BcaC05g24789 Brassica carinata HOM05D013394 ORTHO05D009712 1.2e-42 177.2 186 50.5
BolC5t29492H Brassica oleracea HOM05D013394 ORTHO05D009712 1.2e-42 177.2 186 50.5
A06p06100 Brassica napus HOM05D013394 ORTHO05D009712 3.5e-42 175.6 186 51.1
BraA06t23823Z Brassica rapa HOM05D013394 ORTHO05D009712 7.9e-42 174.5 186 51.1
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 6.7e-17 91.7 163 30.1
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 8.8e-17 91.3 163 30.1
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 8.8e-17 91.3 166 29.5
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 5.7e-16 88.6 167 29.9
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 1.3e-15 87.4 152 32.2
Carub.0001s0871 Capsella rubella HOM05D009911 ORTHO05D009712 8.2e-15 84.7 171 28.1
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 1.1e-14 84.3 169 30.8
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.4e-14 84.0 154 31.8
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 1.4e-14 84.0 148 28.4
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 1.4e-14 84.0 137 32.1
C05p07360 Brassica napus HOM05D009911 ORTHO05D009712 1.8e-14 83.6 160 29.4
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 2.4e-14 83.2 169 29.0
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 2.4e-14 83.2 141 33.3
AL1G19880 Arabidopsis lyrata HOM05D009911 ORTHO05D009712 3.1e-14 82.8 171 26.9
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 1.5e-13 80.5 165 31.5
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 2.6e-13 79.7 165 29.7
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 3.4e-13 79.3 146 29.5
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 4.5e-13 79.0 161 29.8
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 5.9e-13 78.6 164 31.1
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 5.9e-13 78.6 172 27.3
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 7.7e-13 78.2 171 31.0
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 1.3e-12 77.4 176 29.5
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 1.7e-12 77.0 165 27.9
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 2.2e-12 76.6 151 27.8
AT1G09370 Arabidopsis thaliana HOM05D009911 ORTHO05D009712 2.9e-12 76.3 171 28.1
BcaC05g24790 Brassica carinata HOM05D009911 ORTHO05D009712 2.9e-12 76.3 169 28.4
BolC5t29493H Brassica oleracea HOM05D009911 ORTHO05D009712 2.9e-12 76.3 169 28.4
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 2.9e-12 76.3 166 29.5
C05p07380 Brassica napus HOM05D009911 ORTHO05D009712 3.8e-12 75.9 152 27.0
BraA06t23824Z Brassica rapa HOM05D009911 ORTHO05D009712 6.5e-12 75.1 152 27.6
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 8.5e-12 74.7 149 32.9
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.4e-11 73.9 154 29.9
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 2.5e-11 73.2 162 30.2
THA.LOC104816853 Tarenaya hassleriana HOM05D009911 ORTHO05D009712 2.5e-11 73.2 152 26.3
A06p06110 Brassica napus HOM05D009911 ORTHO05D009712 3.2e-11 72.8 152 27.0
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.2e-11 72.8 154 29.9
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 7.2e-11 71.6 163 28.8
A06p06070 Brassica napus HOM05D009911 ORTHO05D009712 1.2e-10 70.9 156 28.8
BraA06t23818Z Brassica rapa HOM05D009911 ORTHO05D009712 1.2e-10 70.9 153 26.8
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.2e-10 70.9 154 28.6
Thhalv10009653m.g Eutrema salsugineum HOM05D009911 ORTHO05D009712 1.6e-10 70.5 151 27.2
CARHR009330 Cardamine hirsuta HOM05D009911 ORTHO05D009712 2.7e-10 69.7 152 25.0
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 2.7e-10 69.7 124 30.6
C05p07370 Brassica napus HOM05D013394 ORTHO05D009712 3.6e-10 69.3 85 50.6
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 3.6e-10 69.3 163 30.1
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 3.6e-10 69.3 146 32.2
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 4.7e-10 68.9 163 30.1
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 4.7e-10 68.9 163 30.1
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 4.7e-10 68.9 125 29.6
Sp1g07980 Schrenkiella parvula HOM05D009911 ORTHO05D009712 7.9e-10 68.2 151 24.5
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.4e-09 67.4 138 29.7
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 2.3e-09 66.6 154 27.9
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 2.3e-09 66.6 154 29.9
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 3.0e-09 66.2 160 25.6
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 3.0e-09 66.2 160 25.6
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 3.0e-09 66.2 166 25.9
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 8.8e-09 64.7 138 29.7
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 3.3e-08 62.8 146 23.3
Oeu043429.1 Olea europaea HOM05D009933 ORTHO05D012084 4.4e-08 62.4 152 25.7
C08p49490 Brassica napus HOM05D009911 ORTHO05D009712 1.1e-06 57.8 152 25.0
BolC5t29496H Brassica oleracea HOM05D009911 ORTHO05D009712 1.1e-06 57.8 167 25.1
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 1.4e-06 57.4 153 24.2
SGA_v2.0_scaffold74G24613 Striga asiatica HOM05D009933 ORTHO05D012084 1.4e-06 57.4 167 24.6
C05p07390 Brassica napus HOM05D009911 ORTHO05D009712 1.8e-06 57.0 167 24.6
MELO3C004164.2 Cucumis melo HOM05D008339 ORTHO05D009712 4.1e-06 55.8 162 25.9
SGA_v2.0_scaffold74G24614 Striga asiatica HOM05D008339 ORTHO05D009712 4.1e-06 55.8 116 23.3
MELO3C004157.2 Cucumis melo HOM05D008339 ORTHO05D009712 7.0e-06 55.1 136 27.9


User provided reference genes

Program Settings