Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR177830 Cardamine hirsuta HOM05D011028 ORTHO05D014935 6.7e-71 270.8 157 100.0
AT5G66910 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 3.3e-30 135.6 119 59.7
A06p41020 Brassica napus HOM05D000529 ORTHO05D000472 1.2e-24 117.1 109 56.0
BraA06t27024Z Brassica rapa HOM05D000529 ORTHO05D000472 1.2e-24 117.1 109 56.0
BraA06t27026Z Brassica rapa HOM05D000529 ORTHO05D000472 1.2e-24 117.1 109 56.0
C07p36720 Brassica napus HOM05D000529 ORTHO05D000472 2.7e-24 115.9 109 55.0
BolC7t44188H Brassica oleracea HOM05D000529 ORTHO05D000472 2.7e-24 115.9 109 55.0
BcaC06g33796 Brassica carinata HOM05D000529 ORTHO05D014935 6.1e-24 114.8 109 54.1
BcaC06g33798 Brassica carinata HOM05D011028 ORTHO05D014935 6.1e-24 114.8 109 54.1
BcaB08g34626 Brassica carinata HOM05D000529 ORTHO05D000472 1.4e-23 113.6 138 47.1
C07p36780 Brassica napus HOM05D000529 ORTHO05D000472 1.4e-23 113.6 135 47.4
A07p17000 Brassica napus HOM05D000529 ORTHO05D000472 1.8e-23 113.2 122 51.6
BraA07t29427Z Brassica rapa HOM05D000529 ORTHO05D000472 1.8e-23 113.2 122 51.6
C07p36750 Brassica napus HOM05D000529 ORTHO05D000472 4.0e-23 112.1 109 52.3
BolC7t44191H Brassica oleracea HOM05D000529 ORTHO05D000472 4.0e-23 112.1 109 52.3
BcaC06g33794 Brassica carinata HOM05D000529 ORTHO05D000472 1.2e-22 110.5 109 53.2
BcaB02g09973 Brassica carinata HOM05D000529 ORTHO05D000472 2.6e-22 109.4 128 48.4
BolC7t44194H Brassica oleracea HOM05D000529 ORTHO05D000472 9.8e-22 107.5 109 54.1
BcaB04g20091 Brassica carinata HOM05D000529 ORTHO05D000472 1.3e-21 107.1 125 49.6
C07p36810 Brassica napus HOM05D000529 ORTHO05D000472 3.7e-21 105.5 109 52.3
Thhalv10005443m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 8.3e-21 104.4 125 47.2
Thhalv10020099m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 1.6e-19 100.1 109 49.5
AL8G44500 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 1.6e-16 90.1 141 43.3
C02p64690 Brassica napus HOM05D000529 ORTHO05D000472 1.8e-15 86.7 137 40.9
BolC2t12531H Brassica oleracea HOM05D000529 ORTHO05D000472 1.8e-15 86.7 137 40.9
A07p16990 Brassica napus HOM05D000529 ORTHO05D000472 2.6e-14 82.8 136 43.4
C07p24850 Brassica napus HOM05D000529 ORTHO05D000472 2.6e-14 82.8 97 50.5
BolC7t43013H Brassica oleracea HOM05D000529 ORTHO05D000472 2.6e-14 82.8 97 50.5
Thhalv10003662m.g Eutrema salsugineum HOM05D000529 ORTHO05D000472 2.6e-14 82.8 135 39.3
BcaC06g30971 Brassica carinata HOM05D000529 ORTHO05D000472 3.4e-14 82.4 78 50.0
AT5G66900 Arabidopsis thaliana HOM05D000529 ORTHO05D000472 4.4e-14 82.0 142 40.8
CARHR289030 Cardamine hirsuta HOM05D000529 ORTHO05D000472 4.4e-14 82.0 112 42.9
A09p09670 Brassica napus HOM05D000529 ORTHO05D000472 1.7e-13 80.1 143 38.5
BraA09t36615Z Brassica rapa HOM05D000529 ORTHO05D000472 1.7e-13 80.1 143 38.5
Sp2g29760 Schrenkiella parvula HOM05D000529 ORTHO05D000472 2.2e-13 79.7 135 40.0
AT5G66630 Arabidopsis thaliana HOM05D000909 ORTHO05D000928 2.8e-13 79.3 124 40.3
C08p40810 Brassica napus HOM05D011028 ORTHO05D014935 2.8e-13 79.3 131 38.9
BraA09t41153Z Brassica rapa HOM05D011028 ORTHO05D014935 4.9e-13 78.6 129 37.2
Sp2g29750 Schrenkiella parvula HOM05D000529 ORTHO05D000472 4.9e-13 78.6 142 38.0
C09p11460 Brassica napus HOM05D000529 ORTHO05D000472 6.3e-13 78.2 114 42.1
AL8G44490 Arabidopsis lyrata HOM05D000529 ORTHO05D000472 8.3e-13 77.8 79 46.8
BolC2t10946H Brassica oleracea HOM05D000529 ORTHO05D000472 8.3e-13 77.8 120 40.0
A09p57610 Brassica napus HOM05D011028 ORTHO05D014935 1.1e-12 77.4 129 38.0
C09p11430 Brassica napus HOM05D000529 ORTHO05D000472 1.1e-12 77.4 115 41.7
THA.LOC104819226 Tarenaya hassleriana HOM05D000529 ORTHO05D000472 1.8e-12 76.6 138 35.5
BcaC04g23168 Brassica carinata HOM05D000529 ORTHO05D000472 2.4e-12 76.3 114 42.1
Carub.0008s2759 Capsella rubella HOM05D000529 ORTHO05D000472 2.4e-12 76.3 115 44.3
BcaC04g23170 Brassica carinata HOM05D000529 ORTHO05D000472 4.1e-12 75.5 115 40.9
BolC9t54031H Brassica oleracea HOM05D000529 ORTHO05D000472 4.1e-12 75.5 115 40.9
BcaB04g20089 Brassica carinata HOM05D000529 ORTHO05D000472 5.4e-12 75.1 142 37.3
BcaB04g20245 Brassica carinata HOM05D000529 ORTHO05D000472 5.4e-12 75.1 148 35.8
A06p36590 Brassica napus HOM05D000529 ORTHO05D000472 1.6e-11 73.6 149 36.9
BcaB02g10007 Brassica carinata HOM05D000909 ORTHO05D014935 2.0e-11 73.2 142 39.4
BraA06t26585Z Brassica rapa HOM05D000529 ORTHO05D000472 5.9e-11 71.6 149 36.9
Aa31LG1G15460 Aethionema arabicum HOM05D000529 ORTHO05D000472 1.3e-10 70.5 108 39.8
BcaB02g09974 Brassica carinata HOM05D000529 ORTHO05D000472 6.6e-10 68.2 120 38.3
C07p37490 Brassica napus HOM05D011028 ORTHO05D014935 8.6e-10 67.8 129 37.2
BcaB08g35062 Brassica carinata HOM05D011028 ORTHO05D014935 1.5e-09 67.0 139 34.5
PSO210G7782 Papaver somniferum HOM05D000033 ORTHO05D030421 1.9e-09 66.6 134 32.1
BcaB08g35058 Brassica carinata HOM05D011028 ORTHO05D014935 7.3e-09 64.7 127 34.6
BolC2t12530H Brassica oleracea HOM05D000529 ORTHO05D000472 7.3e-09 64.7 138 35.5
Duzib147G1638 Durio zibethinus HOM05D000529 ORTHO05D000472 6.8e-07 58.2 137 28.5
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 2.6e-06 56.2 134 31.3
BolC7t43050H Brassica oleracea HOM05D000909 ORTHO05D000928 2.6e-06 56.2 134 31.3
Dinv39897 Davidia involucrata HOM05D000529 ORTHO05D000472 2.6e-06 56.2 113 27.4
A09p57620 Brassica napus HOM05D011028 ORTHO05D023997 3.4e-06 55.8 111 33.3
BraA09t41154Z Brassica rapa HOM05D011028 ORTHO05D023997 3.4e-06 55.8 111 33.3
PSO063G0020 Papaver somniferum HOM05D000033 ORTHO05D304601 7.5e-06 54.7 119 31.1
GSVIVG01003569001 Vitis vinifera HOM05D000529 ORTHO05D019823 7.5e-06 54.7 121 32.2


User provided reference genes

Program Settings