Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 2.5e-56 221.9 110 100.0
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 2.8e-47 191.8 101 94.1
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 8.3e-44 180.3 101 86.1
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 3.5e-42 174.9 101 83.2
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 2.3e-41 172.2 101 82.2
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 3.0e-41 171.8 101 80.2
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 5.0e-41 171.0 101 82.2
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 5.0e-41 171.0 101 82.2
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 1.5e-40 169.5 101 82.2
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 1.5e-40 169.5 101 82.2
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 1.5e-40 169.5 101 82.2
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 4.3e-40 167.9 101 82.2
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 4.7e-39 164.5 101 79.2
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 3.9e-33 144.8 101 68.3
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 2.8e-31 138.7 101 67.3
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 7.8e-26 120.6 101 55.4
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 7.8e-26 120.6 101 56.4
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 1.0e-25 120.2 101 56.4
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.0e-25 120.2 101 54.5
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.3e-25 119.0 101 54.5
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 3.0e-25 118.6 101 55.4
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 1.1e-24 116.7 101 55.4
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 3.3e-24 115.2 101 53.5
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 3.3e-24 115.2 101 57.4
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 7.3e-24 114.0 101 53.5
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 1.2e-23 113.2 101 55.4
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 1.6e-23 112.8 101 54.5
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 4.0e-22 108.2 103 50.5
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 1.2e-21 106.7 101 51.5
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.5e-21 106.3 101 52.5
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 2.0e-21 105.9 101 51.5
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 3.4e-21 105.1 102 52.0
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 5.8e-21 104.4 101 50.5
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 1.7e-20 102.8 101 50.5
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 2.2e-20 102.4 101 49.5
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 2.2e-20 102.4 101 48.5
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 2.9e-20 102.1 101 50.5
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 1.1e-19 100.1 101 49.5
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 2.4e-19 99.0 101 47.5
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 5.4e-19 97.8 101 47.5
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 5.4e-19 97.8 101 45.5
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 5.4e-19 97.8 101 45.5
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 5.4e-19 97.8 101 47.5
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 7.1e-19 97.4 101 47.5
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 1.2e-18 96.7 101 48.5
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 1.6e-18 96.3 101 48.5
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 1.6e-18 96.3 101 47.5
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 2.1e-18 95.9 101 50.5
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 2.1e-18 95.9 101 46.5
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 2.1e-18 95.9 103 47.6
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 2.1e-18 95.9 101 48.5
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 7.8e-18 94.0 101 47.5
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 1.0e-17 93.6 101 49.5
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 1.7e-17 92.8 101 50.5
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 3.0e-17 92.0 101 46.5
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 3.0e-17 92.0 101 45.5
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 3.0e-17 92.0 103 47.6
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 3.0e-17 92.0 101 45.5
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 3.0e-17 92.0 101 50.5
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 3.0e-17 92.0 101 50.5
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 3.9e-17 91.7 102 47.1
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 6.6e-17 90.9 101 45.5
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 1.1e-16 90.1 101 49.5
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.5e-16 89.7 101 45.5
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 1.5e-16 89.7 101 45.5
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 3.3e-16 88.6 101 43.6
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 4.3e-16 88.2 101 47.5
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 5.6e-16 87.8 102 43.1
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 9.6e-16 87.0 101 45.5
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 9.6e-16 87.0 101 47.5
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 1.2e-15 86.7 100 48.0
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 2.1e-15 85.9 101 43.6
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 2.1e-15 85.9 101 45.5
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 1.4e-14 83.2 101 45.5
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 9.0e-14 80.5 101 44.6
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 1.2e-13 80.1 91 45.1
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.2e-13 80.1 118 39.8
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 1.2e-13 80.1 101 44.6
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 2.0e-13 79.3 101 39.6
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 2.0e-13 79.3 91 44.0
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 2.0e-13 79.3 101 43.6
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 3.4e-13 78.6 101 45.5
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 9.9e-13 77.0 101 36.6
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 1.3e-12 76.6 101 46.5
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 2.2e-12 75.9 101 44.6
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 2.9e-12 75.5 101 43.6
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 4.9e-12 74.7 101 41.6
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 4.9e-12 74.7 61 55.7
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 1.1e-11 73.6 101 44.6
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 1.4e-11 73.2 101 44.6
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 3.0e-09 65.5 101 33.7
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 1.1e-06 57.0 46 54.3
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.8e-06 56.2 49 53.1


User provided reference genes

Program Settings