Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 2.1e-310 1068.1 540 100.0
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.1e-289 998.4 540 93.1
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 6.1e-289 996.9 541 93.5
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.6e-286 988.8 542 91.5
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 8.2e-286 986.5 542 91.1
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 1.1e-285 986.1 542 91.1
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.1e-285 986.1 542 91.1
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 2.4e-285 984.9 541 92.6
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.5e-284 982.2 541 91.1
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.5e-284 982.2 541 91.1
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 2.0e-284 981.9 542 91.7
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 7.7e-284 979.9 541 90.9
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 3.8e-283 977.6 537 90.7
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 3.8e-283 977.6 537 90.7
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 3.8e-283 977.6 537 90.7
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 5.0e-283 977.2 537 90.5
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.1e-282 976.1 541 90.9
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 1.2e-281 972.6 537 90.9
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.6e-281 972.2 541 90.6
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 7.9e-281 969.9 533 91.9
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.3e-280 968.4 537 90.1
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 2.8e-278 961.4 566 86.4
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 2.2e-267 925.2 521 88.7
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.4e-248 862.8 542 82.5
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 4.0e-232 808.1 536 76.9
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 7.5e-231 803.9 542 76.0
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 9.8e-231 803.5 525 77.0
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 4.9e-230 801.2 534 76.2
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.2e-229 798.5 533 76.5
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 7.0e-229 797.3 531 75.3
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 3.5e-228 795.0 537 75.8
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.3e-227 793.1 524 76.1
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.3e-227 793.1 530 76.2
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.3e-227 792.3 536 75.2
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 6.6e-227 790.8 541 74.3
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.5e-226 788.9 531 75.0
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 5.6e-226 787.7 530 75.8
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.2e-225 786.6 535 75.1
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 3.1e-224 781.9 523 75.3
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 4.0e-224 781.6 518 75.3
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 4.0e-224 781.6 526 74.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 1.5e-223 779.6 537 73.4
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 4.9e-222 774.6 523 74.2
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 4.9e-222 774.6 525 74.3
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 8.3e-222 773.9 526 73.8
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 8.3e-222 773.9 522 75.3
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 2.4e-221 772.3 529 73.9
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.1e-220 769.2 530 73.2
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 6.0e-220 767.7 542 72.3
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.1e-218 763.5 536 73.1
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 7.3e-218 760.8 533 72.4
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.2e-217 760.0 538 72.7
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.1e-217 759.2 527 72.5
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 4.7e-217 758.1 529 71.8
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.4e-216 755.7 461 82.4
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 3.1e-216 755.4 541 71.0
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.5e-215 753.1 530 72.6
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.0e-215 752.7 524 72.3
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 4.9e-214 748.0 461 82.6
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 7.1e-213 744.2 531 70.4
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 4.6e-212 741.5 491 76.6
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 7.8e-212 740.7 542 70.1
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 3.0e-211 738.8 530 70.2
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 3.9e-211 738.4 529 71.1
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.5e-210 736.5 537 68.9
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.8e-209 732.3 495 74.7
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 2.8e-209 732.3 538 68.4
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 3.6e-209 731.9 527 70.0
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 3.6e-209 731.9 527 69.8
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 8.1e-209 730.7 538 69.1
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.1e-208 730.3 504 72.6
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.1e-208 730.3 519 72.1
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 4.0e-208 728.4 540 69.1
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.0e-208 728.4 531 69.7
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.2e-208 728.0 525 71.6
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 6.9e-208 727.6 536 68.3
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.2e-207 726.9 535 68.0
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.2e-207 726.9 527 69.6
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.9e-205 719.5 531 69.1
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 3.2e-205 718.8 525 68.8
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 5.4e-205 718.0 529 71.1
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 7.8e-204 714.1 531 67.6
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.7e-203 713.0 532 67.5
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 2.3e-203 712.6 519 69.6
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 2.3e-203 712.6 475 76.4
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 3.0e-203 712.2 475 76.0
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.6e-201 706.4 517 70.4
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.1e-201 706.1 434 82.3
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.1e-200 703.7 524 67.7
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.5e-199 699.9 542 65.7
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.0e-199 699.5 531 67.6
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 1.5e-194 683.3 542 64.9
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 5.6e-194 681.4 545 64.0
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 5.6e-194 681.4 536 64.6
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 1.3e-193 680.2 537 63.9
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 3.7e-193 678.7 540 63.5
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 6.2e-193 677.9 542 64.8
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.4e-192 676.8 541 64.7
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 2.4e-192 676.0 528 64.8
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 3.1e-192 675.6 528 64.8
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 4.0e-192 675.2 459 72.3
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.5e-191 673.3 541 64.5
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 7.6e-191 671.0 531 63.1
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 4.9e-190 668.3 532 66.2
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.1e-189 667.2 535 63.2
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 5.5e-189 664.8 533 63.0
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 9.3e-189 664.1 450 76.2
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 2.7e-188 662.5 528 62.7
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 5.6e-186 654.8 465 69.7
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 4.6e-180 635.2 528 60.4
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 3.9e-179 632.1 527 59.6
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 6.7e-179 631.3 446 72.9
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 9.7e-178 627.5 497 62.0
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 2.1e-172 609.8 534 58.6
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 4.6e-172 608.6 390 77.7
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 2.9e-166 589.3 391 76.0
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.8e-160 570.1 534 56.0
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 3.8e-158 562.4 466 61.4
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 8.0e-156 554.7 382 72.8
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 2.9e-150 536.2 529 55.2
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 3.8e-150 535.8 394 68.8
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.2e-146 524.2 388 67.8
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.6e-143 513.8 314 79.9
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 2.7e-140 503.1 358 69.8
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 8.3e-137 491.5 354 69.8
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.6e-130 469.9 468 50.2
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.4e-130 469.5 331 68.3
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 3.1e-128 463.0 522 47.5
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 8.6e-126 454.9 455 49.9
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 2.0e-119 433.7 558 44.4
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 8.9e-115 418.3 541 42.5
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.6e-100 370.9 226 82.3
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 6.0e-95 352.4 194 90.7
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.2e-88 329.7 264 65.9
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 4.0e-75 286.6 151 96.0
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 5.7e-61 239.6 195 64.6
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 5.7e-61 239.6 179 68.7
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 1.1e-51 208.8 171 61.4
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.4e-43 181.8 162 58.6
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 5.3e-43 179.9 139 64.0
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.0e-42 177.9 155 59.4
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 5.9e-42 176.4 143 61.5
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 5.0e-33 146.7 112 63.4
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.6e-31 140.6 97 68.0
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 2.3e-30 137.9 149 52.3
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 6.5e-25 119.8 110 59.1
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 4.0e-22 110.5 76 72.4
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 1.7e-20 105.1 71 70.4
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.6e-18 98.6 470 23.2
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 4.5e-18 97.1 474 23.6
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 8.3e-12 76.3 63 58.7
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 8.3e-12 76.3 63 58.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 8.6e-09 66.2 46 60.9
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 1.9e-08 65.1 45 60.0
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 1.2e-07 62.4 45 62.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.1e-07 61.6 46 56.5
BcaB05g22957 Brassica carinata HOM05D004898 ORTHO05D091614 3.6e-07 60.8 33 78.8
Mapoly0047s0018 Marchantia polymorpha HOM05D011351 ORTHO05D013707 8.9e-06 56.2 132 30.3


User provided reference genes

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