Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 4.2e-49 197.6 93 100.0
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 3.7e-45 184.5 98 91.8
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 3.7e-45 184.5 98 91.8
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 3.7e-45 184.5 98 91.8
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 6.3e-45 183.7 98 90.8
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 6.3e-45 183.7 98 91.8
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 4.1e-44 181.0 98 89.8
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 4.1e-44 181.0 93 92.5
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 4.1e-44 181.0 93 92.5
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 9.2e-44 179.9 93 91.4
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 1.0e-42 176.4 94 91.5
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 1.0e-42 176.4 94 91.5
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 1.7e-42 175.6 93 89.2
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 1.7e-42 175.6 93 89.2
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 1.2e-40 169.5 98 83.7
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 1.2e-40 169.5 93 86.0
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 5.2e-39 164.1 100 79.0
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.2e-35 152.9 93 74.2
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 1.2e-35 152.9 93 74.2
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 1.6e-35 152.5 93 76.3
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 2.7e-35 151.8 93 73.1
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.0e-34 149.8 93 72.0
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 1.7e-34 149.1 80 90.0
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 1.1e-33 146.4 93 71.0
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 1.9e-33 145.6 93 68.8
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 4.3e-33 144.4 93 69.9
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 9.5e-33 143.3 97 72.2
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 1.6e-32 142.5 93 68.8
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 1.1e-31 139.8 97 68.0
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 1.4e-31 139.4 96 69.8
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 3.1e-31 138.3 101 69.3
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 8.9e-31 136.7 103 68.0
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 8.9e-31 136.7 93 66.7
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 3.4e-30 134.8 100 69.0
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 4.4e-30 134.4 94 70.2
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 7.5e-30 133.7 98 68.4
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 9.8e-30 133.3 99 68.7
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 9.8e-30 133.3 101 69.3
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 1.3e-29 132.9 96 67.7
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 2.2e-29 132.1 97 67.0
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 4.9e-29 131.0 97 67.0
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 6.4e-29 130.6 93 64.5
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 6.4e-29 130.6 100 66.0
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 8.3e-29 130.2 99 65.7
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 1.1e-28 129.8 97 66.0
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.4e-28 128.6 94 64.9
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 5.4e-28 127.5 99 64.6
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 9.2e-28 126.7 111 58.6
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 2.1e-27 125.6 101 65.3
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 2.7e-27 125.2 94 63.8
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 3.5e-27 124.8 106 58.5
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 3.5e-27 124.8 103 61.2
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 4.6e-27 124.4 107 58.9
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 4.6e-27 124.4 92 67.4
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 6.0e-27 124.0 91 63.7
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 7.8e-27 123.6 104 61.5
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 7.8e-27 123.6 103 62.1
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 1.0e-26 123.2 104 60.6
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 1.0e-26 123.2 104 61.5
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 1.0e-26 123.2 95 64.2
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.3e-26 122.9 95 65.3
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 1.7e-26 122.5 106 59.4
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 1.7e-26 122.5 103 63.1
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 1.7e-26 122.5 100 65.0
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 1.7e-26 122.5 96 61.5
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 1.7e-26 122.5 99 62.6
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 2.3e-26 122.1 104 59.6
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 3.0e-26 121.7 103 60.2
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 3.0e-26 121.7 100 67.0
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 3.9e-26 121.3 103 62.1
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 5.1e-26 120.9 94 63.8
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 5.1e-26 120.9 103 63.1
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 6.6e-26 120.6 103 62.1
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 6.6e-26 120.6 103 61.2
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 6.6e-26 120.6 103 61.2
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 8.6e-26 120.2 105 61.9
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 8.6e-26 120.2 103 60.2
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 1.1e-25 119.8 99 62.6
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 1.5e-25 119.4 110 60.9
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 1.5e-25 119.4 110 60.9
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.5e-25 119.4 107 59.8
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.5e-25 119.4 107 59.8
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 1.5e-25 119.4 107 59.8
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 1.9e-25 119.0 100 60.0
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 3.3e-25 118.2 99 60.6
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 3.3e-25 118.2 103 61.2
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 7.3e-25 117.1 101 58.4
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 9.5e-25 116.7 105 60.0
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 2.8e-24 115.2 105 59.0
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 3.6e-24 114.8 103 57.3
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 3.6e-24 114.8 101 60.4
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 6.2e-24 114.0 102 59.8
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 6.2e-24 114.0 102 57.8
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 8.1e-24 113.6 98 57.1
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 8.1e-24 113.6 98 57.1
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 1.1e-23 113.2 100 56.0
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 1.4e-23 112.8 93 58.1
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 1.4e-23 112.8 106 60.4
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 2.3e-23 112.1 87 64.4
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 3.1e-23 111.7 100 60.0
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 3.1e-23 111.7 96 58.3
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 4.0e-23 111.3 67 77.6
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 5.2e-23 110.9 100 59.0
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 5.2e-23 110.9 100 59.0
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 6.8e-23 110.5 78 69.2
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 2.0e-22 109.0 95 57.9
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 2.6e-22 108.6 100 57.0
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 2.6e-22 108.6 75 68.0
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 3.4e-22 108.2 95 57.9
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 5.8e-22 107.5 67 76.1
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 9.9e-22 106.7 65 78.5
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 1.3e-21 106.3 67 74.6
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 2.4e-20 102.1 62 74.2
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 1.6e-19 99.4 101 54.5
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 3.5e-19 98.2 108 50.0
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 6.0e-19 97.4 93 57.0
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 1.7e-18 95.9 84 53.6
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 7.3e-17 90.5 67 58.2
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 2.8e-16 88.6 65 61.5
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 1.8e-15 85.9 85 48.2
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 6.8e-15 84.0 82 47.6
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 1.2e-14 83.2 52 69.2
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 7.6e-14 80.5 91 49.5
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 4.2e-12 74.7 55 65.5
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 1.6e-11 72.8 50 70.0
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 2.3e-10 68.9 32 87.5
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 1.5e-09 66.2 132 37.1
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 4.3e-09 64.7 70 48.6


User provided reference genes

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