Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR170110 Cardamine hirsuta HOM05D004461 ORTHO05D005543 0.0e+00 1946.8 975 100.0
AL5G41810 Arabidopsis lyrata HOM05D004461 ORTHO05D005543 0.0e+00 1740.3 975 89.9
AT3G59770 Arabidopsis thaliana HOM05D004461 ORTHO05D005543 0.0e+00 1730.7 977 89.5
Sp5g03430 Schrenkiella parvula HOM05D004461 ORTHO05D005543 0.0e+00 1730.7 975 88.8
Carub.0005s2648 Capsella rubella HOM05D004461 ORTHO05D005543 0.0e+00 1725.3 975 89.1
C06p26390 Brassica napus HOM05D004461 ORTHO05D005543 0.0e+00 1718.0 975 87.6
BcaC08g45004 Brassica carinata HOM05D004461 ORTHO05D005543 0.0e+00 1716.8 975 87.5
BolC6t37801H Brassica oleracea HOM05D004461 ORTHO05D005543 0.0e+00 1716.8 975 87.5
BraA07t30125Z Brassica rapa HOM05D004461 ORTHO05D005543 0.0e+00 1716.0 975 87.5
Thhalv10005739m.g Eutrema salsugineum HOM05D004461 ORTHO05D005543 0.0e+00 1713.0 975 87.5
A07p24810 Brassica napus HOM05D004461 ORTHO05D005543 0.0e+00 1703.0 975 86.9
BcaB02g07448 Brassica carinata HOM05D004461 ORTHO05D005543 0.0e+00 1693.7 975 86.9
A09p52040 Brassica napus HOM05D004461 ORTHO05D005543 0.0e+00 1661.4 976 84.7
BraA09t40637Z Brassica rapa HOM05D004461 ORTHO05D005543 0.0e+00 1661.4 976 84.5
C08p34720 Brassica napus HOM05D004461 ORTHO05D005543 0.0e+00 1660.2 976 84.8
BolC8t51074H Brassica oleracea HOM05D004461 ORTHO05D005543 0.0e+00 1649.8 992 83.5
BcaC07g40502 Brassica carinata HOM05D004461 ORTHO05D005543 0.0e+00 1649.4 977 84.3
BcaC07g40444 Brassica carinata HOM05D004461 ORTHO05D005543 0.0e+00 1639.4 978 84.7
Aa31LG10G14020 Aethionema arabicum HOM05D004461 ORTHO05D005543 0.0e+00 1523.5 1019 76.2
Atru.chr4.1475 Acer truncatum HOM05D004461 ORTHO05D005543 0.0e+00 1201.8 991 62.9
Gorai.006G232600 Gossypium raimondii HOM05D004461 ORTHO05D005543 0.0e+00 1201.4 982 62.9
Gohir.D09G212800 Gossypium hirsutum HOM05D004461 ORTHO05D005543 0.0e+00 1199.1 982 62.7
Duzib268G0878 Durio zibethinus HOM05D004461 ORTHO05D005543 0.0e+00 1195.3 985 62.3
Thecc.04G163000 Theobroma cacao HOM05D004461 ORTHO05D005543 0.0e+00 1192.6 987 62.0
GSVIVG01038186001 Vitis vinifera HOM05D004461 ORTHO05D005543 0.0e+00 1191.4 978 63.1
Gohir.A09G213618 Gossypium hirsutum HOM05D004461 ORTHO05D005543 0.0e+00 1191.0 982 62.7
COL.COLO4_08073 Corchorus olitorius HOM05D004461 ORTHO05D005543 0.0e+00 1189.9 986 61.8
Prupe.7G266700 Prunus persica HOM05D004461 ORTHO05D005543 0.0e+00 1183.7 986 61.7
RcHm_v2.0_Chr2g0085161 Rosa chinensis HOM05D004461 ORTHO05D005543 0.0e+00 1178.7 987 61.3
MD15G1148100 Malus domestica HOM05D004461 ORTHO05D005543 0.0e+00 1169.8 986 60.1
MD02G1004400 Malus domestica HOM05D004461 ORTHO05D005543 0.0e+00 1166.8 986 60.4
Potri.013G128500 Populus trichocarpa HOM05D004461 ORTHO05D005543 0.0e+00 1161.4 996 59.6
FvH4_1g00530 Fragaria vesca HOM05D004461 ORTHO05D005543 0.0e+00 1159.1 987 60.9
QL10p057561 Quercus lobata HOM05D004461 ORTHO05D005543 0.0e+00 1158.7 1026 59.1
Manes.05G186753 Manihot esculenta HOM05D004461 ORTHO05D005543 0.0e+00 1153.7 992 60.3
PGR042G2498 Punica granatum HOM05D004461 ORTHO05D005543 0.0e+00 1144.0 982 59.5
FAN23G0135 Fragaria x ananassa HOM05D004461 ORTHO05D005543 0.0e+00 1143.3 1015 58.9
Dinv33221 Davidia involucrata HOM05D004461 ORTHO05D005543 0.0e+00 1136.7 986 60.1
CSS0001430 Camellia sinensis var. sinensis HOM05D004461 ORTHO05D005543 0.0e+00 1130.5 989 60.0
FAN28G0648 Fragaria x ananassa HOM05D004461 ORTHO05D005543 0.0e+00 1129.8 986 59.8
Sabra13G0107300 Salix brachista HOM05D004461 ORTHO05D005543 0.0e+00 1127.9 996 58.4
CANSAT56G3181 Cannabis sativa HOM05D004461 ORTHO05D005543 0.0e+00 1122.1 990 58.4
Lj4g0007039 Lotus japonicus HOM05D004461 ORTHO05D005543 0.0e+00 1119.0 984 59.2
Lalb_Chr16g0384381 Lupinus albus HOM05D004461 ORTHO05D005543 0.0e+00 1112.8 987 58.8
Actinidia18410 Actinidia chinensis HOM05D004461 ORTHO05D005543 0.0e+00 1110.5 987 59.0
TAR623G0001 Trochodendron aralioides HOM05D004461 ORTHO05D005543 0.0e+00 1110.1 990 59.9
TWI75G0299 Tripterygium wilfordii HOM05D004461 ORTHO05D005543 0.0e+00 1103.6 992 58.9
Aqoxy1G02097 Aquilegia oxysepala HOM05D004461 ORTHO05D005543 0.0e+00 1102.8 982 58.0
Psat7g119400 Pisum sativum HOM05D004461 ORTHO05D005543 0.0e+00 1102.8 984 59.3
FAN26G3123 Fragaria x ananassa HOM05D004461 ORTHO05D005543 0.0e+00 1101.7 1002 57.8
Cc03_g14480 Coffea canephora HOM05D004461 ORTHO05D005543 0.0e+00 1100.9 986 57.8
Glyma.02G138500 Glycine max HOM05D004461 ORTHO05D005543 0.0e+00 1096.6 979 58.6
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 0.0e+00 1094.7 986 58.9
Glyma.07G206500 Glycine max HOM05D004461 ORTHO05D005543 0.0e+00 1092.4 977 57.9
Medtr4g087530 Medicago truncatula HOM05D004461 ORTHO05D005543 0.0e+00 1092.4 979 58.9
Rhsim09G0007800 Rhododendron simsii HOM05D004461 ORTHO05D005543 0.0e+00 1092.0 1038 56.6
PSO541G3578 Papaver somniferum HOM05D004461 ORTHO05D005543 0.0e+00 1091.6 987 56.8
Haze_00857 Corylus avellana HOM05D004461 ORTHO05D005543 0.0e+00 1090.1 1017 58.1
Phvul.003G059900 Phaseolus vulgaris HOM05D004461 ORTHO05D005543 0.0e+00 1088.2 983 58.2
ClCG11G016890 Citrullus lanatus HOM05D004461 ORTHO05D005543 0.0e+00 1085.1 986 58.3
PSO675G1807 Papaver somniferum HOM05D004461 ORTHO05D005543 0.0e+00 1084.7 987 56.5
VMungo0251G2958 Vigna mungo HOM05D004461 ORTHO05D005543 0.0e+00 1084.3 983 57.5
Ca_18625_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 0.0e+00 1078.5 985 57.8
Nn1g07161 Nelumbo nucifera HOM05D004461 ORTHO05D005543 0.0e+00 1077.4 996 57.1
CsaV3_4G032510 Cucumis sativus L. HOM05D004461 ORTHO05D005543 0.0e+00 1076.6 992 57.3
Hund22530 Selenicereus undatus HOM05D004461 ORTHO05D005543 6.7e-312 1074.7 989 56.6
arahy.Tifrunner.gnm1.ann1.XYX0FU Arachis hypogaea HOM05D004461 ORTHO05D005543 4.7e-311 1071.2 1047 55.7
Dinv13732 Davidia involucrata HOM05D004461 ORTHO05D005543 6.0e-311 1070.8 986 57.2
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 1.3e-310 1069.7 984 57.5
Lju470C15G3 Lonicera japonica HOM05D004461 ORTHO05D005543 2.3e-310 1068.9 988 58.2
MSTRG.9726 Avicennia marina HOM05D004461 ORTHO05D005543 3.3e-309 1065.1 987 55.9
Atru.chr4.1504 Acer truncatum HOM05D004461 ORTHO05D005543 1.6e-308 1062.8 899 62.1
AUR62002415 Chenopodium quinoa HOM05D004461 ORTHO05D005543 2.1e-308 1062.4 976 56.9
AUR62023774 Chenopodium quinoa HOM05D004461 ORTHO05D005543 1.4e-307 1059.7 976 56.7
Eucgr.L00012 Eucalyptus grandis HOM05D004461 ORTHO05D005543 8.9e-307 1057.0 986 56.4
Sc25g0002880 Simmondsia chinensis HOM05D004461 ORTHO05D005543 1.5e-306 1056.2 978 56.7
MELO3C026365.2 Cucumis melo HOM05D004461 ORTHO05D005543 7.5e-306 1053.9 1004 56.1
SalBow1G4521 Salvia bowleyana HOM05D004461 ORTHO05D005543 8.6e-302 1040.4 1024 53.9
Migut.A00584 Erythranthe guttata HOM05D004461 ORTHO05D005543 2.5e-301 1038.9 994 55.2
SalBow1G6497 Salvia bowleyana HOM05D004461 ORTHO05D005543 2.5e-301 1038.9 1028 53.5
EL10Ac3g06109 Beta vulgaris HOM05D004461 ORTHO05D005543 1.2e-300 1036.6 1080 52.4
CAN.G1190.30 Capsicum annuum HOM05D004461 ORTHO05D005543 6.8e-299 1030.8 986 55.3
Sopen08g013610 Solanum pennellii HOM05D004461 ORTHO05D005543 6.4e-297 1024.2 986 55.3
DCAR_005452 Daucus carota HOM05D004461 ORTHO05D005543 2.4e-296 1022.3 983 55.8
Gorai.005G010100 Gossypium raimondii HOM05D004461 ORTHO05D005543 3.3e-293 1011.9 978 56.4
ECA233G2329 Erigeron canadensis HOM05D004461 ORTHO05D005543 6.6e-286 987.6 978 55.5
THA.LOC104802333 Tarenaya hassleriana HOM05D004461 ORTHO05D005543 1.1e-280 970.3 662 74.2
Nn1g03495 Nelumbo nucifera HOM05D004461 ORTHO05D005543 2.6e-274 949.1 912 55.2
HanXRQChr04g0109651 Helianthus annuus HOM05D004461 ORTHO05D005543 7.6e-274 947.6 984 53.3
Lsat_1_v5_gn_7_77561 Lactuca sativa HOM05D004461 ORTHO05D005543 9.3e-272 940.6 997 52.2
Peaxi162Scf00883g00910 Petunia axillaris HOM05D004461 ORTHO05D005543 1.3e-265 920.2 897 55.4
SGA_v2.0_scaffold90G27634 Striga asiatica HOM05D004461 ORTHO05D005543 5.5e-264 914.8 1012 50.4
Solyc08g044400.3 Solanum lycopersicum HOM05D004461 ORTHO05D005543 1.3e-262 910.2 897 54.6
ECA248G0881 Erigeron canadensis HOM05D004461 ORTHO05D005543 1.8e-262 909.8 983 51.6
ATR0796G101 Amborella trichopoda HOM05D004461 ORTHO05D005543 1.3e-260 903.7 1010 49.0
HanXRQChr01g0023421 Helianthus annuus HOM05D004461 ORTHO05D005543 7.4e-253 877.9 979 49.5
HPP92_017806 Vanilla planifolia HOM05D004461 ORTHO05D005543 6.5e-241 838.2 1052 45.9
Gohir.A02G008301 Gossypium hirsutum HOM05D004461 ORTHO05D005543 2.3e-238 829.7 869 53.7
Gohir.D02G008532 Gossypium hirsutum HOM05D004461 ORTHO05D005543 2.3e-238 829.7 869 54.0
Lsat_1_v5_gn_1_74200 Lactuca sativa HOM05D004461 ORTHO05D005543 3.9e-238 828.9 985 49.0
CSS0004381 Camellia sinensis var. sinensis HOM05D004461 ORTHO05D005543 3.7e-236 822.4 772 56.3
Zm00001eb208570 Zea mays HOM05D004461 ORTHO05D005543 1.1e-232 810.8 990 47.6
unitig_736.g22475 Utricularia gibba HOM05D004461 ORTHO05D005543 7.2e-232 808.1 975 46.6
Duzib212G0381 Durio zibethinus HOM05D004461 ORTHO05D005543 8.0e-231 804.7 978 46.7
Os01g0355600 Oryza sativa ssp. japonica HOM05D004461 ORTHO05D005543 1.0e-230 804.3 994 46.8
CDE04G2300 Ceratophyllum demersum HOM05D004461 ORTHO05D005543 6.1e-207 725.3 901 45.7
Sed0020878 Sechium edule HOM05D004461 ORTHO05D005543 1.5e-197 694.1 661 57.3
Nitab4.5_0000474g0020 Nicotiana tabacum HOM05D004461 ORTHO05D005543 9.2e-195 684.9 659 55.2
Ah.13g073400 Amaranthus hybridus HOM05D004461 ORTHO05D005543 1.0e-185 654.8 702 51.9
Sed0010516 Sechium edule HOM05D004461 ORTHO05D005543 7.8e-170 602.1 780 46.7
SGA_v2.0_scaffold96G29048 Striga asiatica HOM05D004461 ORTHO05D005543 9.9e-165 585.1 656 49.4
Nitab4.5_0002660g0040 Nicotiana tabacum HOM05D004461 ORTHO05D005543 4.6e-154 549.7 645 47.9
SMO165G0142 Selaginella moellendorffii HOM05D004461 ORTHO05D005543 2.1e-151 540.8 991 36.8
SHI26120 Sapria himalayana HOM05D004461 ORTHO05D005543 1.8e-145 521.2 594 49.5
Pp3c2_24100 Physcomitrium patens HOM05D004461 ORTHO05D005543 1.2e-141 508.4 1005 33.7
BcaC07g40445 Brassica carinata HOM05D004461 ORTHO05D005543 6.1e-138 496.1 316 77.8
Mapoly0056s0107 Marchantia polymorpha HOM05D004461 ORTHO05D005543 2.3e-137 494.2 1039 33.3
AagrBONN_evm.TU.Sc2ySwM_362.1413 Anthoceros agrestis HOM05D004461 ORTHO05D005543 5.1e-137 493.0 1005 35.0
CiPaw.01G169500 Carya illinoinensis HOM05D004461 ORTHO05D005543 8.8e-113 412.5 319 63.9
Eucgr.G01607 Eucalyptus grandis HOM05D004461 ORTHO05D005543 2.9e-100 370.9 303 59.1
Cpa.g.sc343.6 Carica papaya HOM05D004461 ORTHO05D005543 8.3e-95 352.8 880 30.9
Nitab4.5_0000474g0010 Nicotiana tabacum HOM05D004461 ORTHO05D005543 2.0e-88 331.6 326 54.3
Gohir.D02G008175 Gossypium hirsutum HOM05D004461 ORTHO05D005543 7.5e-88 329.7 335 54.3
Nitab4.5_0002660g0030 Nicotiana tabacum HOM05D004461 ORTHO05D005543 1.3e-87 328.9 325 54.8
TAR624G0657 Trochodendron aralioides HOM05D004461 ORTHO05D005543 3.9e-84 317.4 368 51.9
vmacro00709 Vaccinium macrocarpon HOM05D004461 ORTHO05D005543 8.6e-84 316.2 440 43.9
SEGI_23669 Sequoiadendron giganteum HOM05D004461 ORTHO05D005543 1.5e-75 288.9 315 49.8
SEGI_16668 Sequoiadendron giganteum HOM05D004461 ORTHO05D005543 1.6e-66 258.8 334 47.0
TAR624G0217 Trochodendron aralioides HOM05D004461 ORTHO05D005543 6.6e-60 236.9 239 52.7
CBR_g55037 Chara braunii HOM05D004461 ORTHO05D005543 1.9e-59 235.3 1330 24.5
MBI11_g07551_MAGBIO Magnolia biondii HOM05D004461 ORTHO05D005543 9.6e-59 233.0 328 43.9
Ciclev10018900m.g Citrus clementina HOM05D004461 ORTHO05D005543 1.1e-51 209.5 125 76.8
SEGI_12893 Sequoiadendron giganteum HOM05D004461 ORTHO05D005543 5.3e-49 200.7 356 37.9
CSS0024115 Camellia sinensis var. sinensis HOM05D004461 ORTHO05D005543 3.1e-33 148.3 93 72.0
Lsat_1_v5_gn_3_101581 Lactuca sativa HOM05D004461 ORTHO05D029960 6.5e-31 140.6 127 54.3
vmacro00682 Vaccinium macrocarpon HOM05D004461 ORTHO05D005543 8.4e-31 140.2 99 69.7
Lsat_1_v5_gn_2_119641 Lactuca sativa HOM05D004461 ORTHO05D029960 6.0e-29 134.0 127 53.5
TAR624G0560 Trochodendron aralioides HOM05D004461 ORTHO05D005543 5.1e-28 131.0 136 52.2
Atru.chr4.1505 Acer truncatum HOM05D004461 ORTHO05D005543 9.7e-27 126.7 83 68.7
Solyc08g044410.1 Solanum lycopersicum HOM05D004461 ORTHO05D005543 2.2e-26 125.6 82 67.1
Nn1g03496 Nelumbo nucifera HOM05D004461 ORTHO05D005543 2.4e-25 122.1 83 67.5
BcaB02g08211 Brassica carinata HOM05D021787 ORTHO05D005543 3.9e-20 104.8 102 56.9
Lsat_1_v5_gn_3_104101 Lactuca sativa HOM05D004461 ORTHO05D005543 2.2e-15 89.0 157 39.5
SHI26123 Sapria himalayana HOM05D004461 ORTHO05D029960 3.9e-12 78.2 83 55.4


User provided reference genes

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