Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 0.0e+00 1409.8 762 100.0
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.4e-301 1037.7 784 73.6
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 9.7e-301 1036.6 780 72.8
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 2.5e-296 1021.9 784 71.6
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 6.3e-292 1007.3 781 72.2
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.5e-288 996.1 771 71.9
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.1e-248 863.6 799 62.8
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 4.3e-248 861.7 799 62.7
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 6.2e-247 857.8 800 62.6
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 6.4e-244 847.8 798 62.3
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 6.4e-236 821.2 823 60.3
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 3.0e-225 785.8 770 60.3
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.8e-209 733.4 786 54.6
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.2e-171 605.9 726 50.7
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 4.2e-171 605.9 677 56.4
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.1e-170 603.6 769 51.1
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.6e-146 524.2 765 45.8
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.5e-131 474.6 784 41.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.7e-127 461.1 707 44.0
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 9.9e-120 435.3 760 40.4
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.3e-119 434.9 760 40.4
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 4.9e-119 433.0 764 40.1
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 4.2e-118 429.9 734 40.5
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 6.0e-117 426.0 778 38.8
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.4e-113 414.1 791 38.7
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.4e-113 414.1 806 39.0
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 4.0e-113 413.3 678 41.7
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 5.3e-113 412.9 742 39.1
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 9.0e-113 412.1 821 37.0
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 2.0e-112 411.0 776 38.9
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 5.8e-112 409.5 688 40.8
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 5.8e-112 409.5 675 41.6
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.8e-111 406.8 814 39.2
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 6.4e-111 406.0 673 39.1
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 2.4e-110 404.1 858 36.2
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 2.4e-110 404.1 802 37.3
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.7e-109 400.6 789 38.5
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.0e-108 398.7 807 37.8
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 2.3e-108 397.5 615 43.6
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 3.9e-108 396.7 807 38.3
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 7.4e-107 392.5 808 34.9
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 7.4e-107 392.5 661 39.9
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 2.1e-106 391.0 822 34.5
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 8.2e-106 389.0 854 36.7
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 1.1e-105 388.7 780 38.5
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 2.0e-104 384.4 827 35.9
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 3.4e-104 383.6 823 36.1
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.0e-103 382.1 771 36.6
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 1.0e-103 382.1 787 36.8
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.2e-103 380.9 817 36.1
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 1.1e-102 378.6 813 36.2
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.1e-102 378.6 763 37.1
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 7.1e-102 375.9 643 39.2
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 3.0e-100 370.5 810 37.2
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 3.0e-100 370.5 670 37.5
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 5.1e-100 369.8 776 36.7
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.1e-99 368.6 765 37.6
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 7.4e-99 365.9 773 36.0
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.8e-98 364.0 689 38.6
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 2.0e-96 357.8 752 36.6
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 2.6e-96 357.5 796 36.2
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 5.9e-96 356.3 767 37.0
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.3e-95 355.1 818 34.6
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 8.5e-95 352.4 787 33.5
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 8.5e-95 352.4 850 33.1
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 1.4e-94 351.7 882 33.7
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 1.8e-92 344.7 742 37.5
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.8e-92 344.7 812 34.2
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 3.0e-92 344.0 704 36.9
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 6.7e-92 342.8 765 36.5
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 1.9e-91 341.3 737 35.5
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 5.7e-91 339.7 731 36.3
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 5.7e-91 339.7 791 35.5
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 9.7e-91 339.0 777 34.6
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 4.8e-90 336.7 743 36.6
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 4.8e-90 336.7 690 36.4
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.1e-89 335.5 666 35.6
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 4.1e-89 333.6 800 36.4
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.9e-87 327.4 775 35.0
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 6.7e-84 316.2 690 36.1
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 6.7e-84 316.2 709 34.8
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.5e-83 315.1 742 35.3
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.0e-83 314.7 660 36.8
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 3.3e-83 313.9 877 31.1
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.4e-83 312.8 739 35.5
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 2.4e-81 307.8 797 32.6
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.7e-80 302.8 723 33.2
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 7.7e-80 302.8 782 33.9
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.0e-79 302.4 739 34.0
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 2.2e-79 301.2 927 31.2
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 5.0e-79 300.1 786 32.4
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 2.5e-78 297.7 230 68.7
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 4.7e-77 293.5 729 32.8
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 9.7e-75 285.8 717 32.9
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 9.7e-75 285.8 615 37.1
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 2.2e-74 284.6 672 32.0
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 8.2e-74 282.7 898 31.3
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 2.4e-73 281.2 821 34.2
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 9.4e-70 269.2 736 30.7
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 1.5e-67 261.9 769 30.3
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 5.7e-67 260.0 797 30.5
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 9.7e-67 259.2 870 30.0
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 9.7e-67 259.2 706 32.3
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.8e-65 255.0 829 28.8
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 5.3e-65 253.4 805 32.5
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 7.0e-65 253.1 774 31.9
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 2.7e-64 251.1 687 32.9
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 4.2e-62 243.8 958 29.3
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 4.2e-62 243.8 761 31.5
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 7.2e-62 243.0 588 31.6
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.6e-61 241.9 910 27.5
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 2.3e-60 238.0 841 31.3
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 9.1e-57 226.1 311 44.1
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.6e-53 215.3 282 46.8
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 9.8e-51 206.1 277 43.7
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 3.5e-48 197.6 430 34.4
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.5e-48 197.2 746 25.7
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 2.9e-47 194.5 750 28.9
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 8.0e-45 186.4 734 29.4
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.2e-42 178.3 276 40.2
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.8e-37 161.4 743 25.0
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.7e-34 152.1 140 55.0
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 4.9e-34 150.6 166 54.8
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 6.4e-34 150.2 223 41.3
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.8e-28 132.1 169 50.3
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.8e-28 130.2 194 42.8
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 2.6e-27 128.3 380 31.3
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 5.8e-27 127.1 833 24.2
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 8.3e-26 123.2 381 32.0
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 6.6e-23 113.6 147 44.9
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.4e-20 105.9 330 32.4
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 8.9e-20 103.2 400 31.8
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 2.6e-19 101.7 364 31.0
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 2.3e-15 88.6 218 31.2
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 9.6e-14 83.2 218 30.7
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.2e-13 82.8 78 53.8
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.1e-12 79.7 215 31.2
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.8e-12 79.0 146 32.9


User provided reference genes

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