Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 8.6e-135 483.8 269 100.0
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 1.2e-120 436.8 269 90.3
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 1.6e-120 436.4 269 91.1
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 1.7e-119 433.0 269 89.6
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 1.2e-117 426.8 269 89.6
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 1.4e-116 423.3 270 87.8
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 4.0e-116 421.8 270 87.4
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 3.4e-115 418.7 267 87.6
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 1.4e-113 413.3 271 86.3
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 5.4e-113 411.4 273 86.8
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 1.2e-112 410.2 273 86.4
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 1.1e-108 397.1 243 87.7
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 1.0e-103 380.6 270 80.4
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 9.6e-94 347.4 273 74.7
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 2.5e-86 322.8 272 70.2
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 4.2e-81 305.4 260 68.1
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 9.3e-81 304.3 260 67.7
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 3.5e-80 302.4 252 69.8
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 6.7e-79 298.1 249 69.1
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 8.7e-79 297.7 256 69.1
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.9e-78 296.6 249 69.1
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 2.5e-78 296.2 249 68.3
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 5.7e-78 295.0 264 65.2
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 5.7e-78 295.0 252 68.7
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 7.4e-78 294.7 248 67.7
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 9.6e-78 294.3 251 69.7
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.3e-77 293.9 248 68.5
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 2.1e-77 293.1 259 67.2
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 2.1e-77 293.1 252 68.3
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 2.8e-77 292.7 252 68.3
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 4.8e-77 292.0 259 65.3
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 3.1e-76 289.3 257 61.5
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 6.9e-76 288.1 257 61.5
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 9.0e-76 287.7 262 62.6
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 1.5e-75 287.0 254 67.7
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 2.0e-75 286.6 246 66.7
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 3.4e-75 285.8 269 64.3
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 4.5e-75 285.4 251 67.3
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 2.2e-74 283.1 256 64.5
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 2.2e-74 283.1 257 57.6
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 6.5e-74 281.6 256 64.1
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 5.5e-73 278.5 255 65.9
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 7.2e-73 278.1 270 61.9
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 7.2e-73 278.1 275 54.9
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 1.2e-72 277.3 246 61.8
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 1.2e-72 277.3 248 67.3
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 4.6e-72 275.4 272 60.7
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 5.1e-71 271.9 259 63.7
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 1.9e-70 270.0 253 60.5
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 2.5e-70 269.6 272 63.2
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 9.7e-70 267.7 253 58.1
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 9.7e-70 267.7 261 63.6
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.8e-69 265.4 253 64.4
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.4e-68 263.8 245 62.4
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 1.4e-68 263.8 260 62.7
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 2.6e-67 259.6 260 57.3
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 5.9e-67 258.5 252 62.7
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.1e-65 254.2 223 65.9
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 1.9e-65 253.4 251 61.8
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 2.5e-65 253.1 259 62.9
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 3.2e-65 252.7 253 60.5
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 3.2e-65 252.7 257 62.3
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 3.2e-65 252.7 259 57.9
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 3.2e-65 252.7 253 59.3
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 2.3e-63 246.5 223 66.4
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 3.9e-63 245.7 265 60.0
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 3.9e-63 245.7 256 59.4
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 3.9e-63 245.7 252 57.9
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 9.7e-62 241.1 287 52.6
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 1.7e-61 240.4 267 59.2
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 3.7e-61 239.2 254 57.5
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 3.7e-61 239.2 250 60.0
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 9.1e-60 234.6 270 55.2
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 1.2e-59 234.2 248 60.9
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.5e-59 232.3 253 57.7
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 5.9e-59 231.9 265 55.1
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 2.9e-58 229.6 245 59.2
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 3.8e-58 229.2 248 58.1
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 8.5e-58 228.0 250 58.4
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 4.2e-57 225.7 250 58.4
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 1.6e-56 223.8 196 62.8
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 6.1e-56 221.9 247 59.5
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 2.3e-55 219.9 254 56.3
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 5.2e-55 218.8 190 63.2
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 6.7e-55 218.4 253 58.9
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 1.3e-53 214.2 222 60.8
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 6.3e-53 211.8 255 55.3
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 3.1e-52 209.5 194 61.9
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 4.1e-52 209.1 254 55.1
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 7.0e-52 208.4 206 58.7
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 2.6e-51 206.5 234 58.1
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 1.3e-50 204.1 250 54.4
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 6.5e-50 201.8 256 54.7
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 4.7e-48 195.7 261 47.1
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 8.0e-48 194.9 242 51.2
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 2.0e-46 190.3 192 53.6
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 5.7e-46 188.7 238 52.5
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 1.7e-42 177.2 154 61.7
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 3.8e-42 176.0 253 43.1
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.2e-41 172.6 157 61.1
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 1.4e-39 167.5 257 47.9
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 2.3e-39 166.8 261 39.8
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.3e-37 158.7 153 53.6
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 2.7e-35 153.3 272 43.8
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.8e-34 149.4 127 64.6
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.8e-34 149.4 163 56.4
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 8.6e-34 148.3 260 36.2
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 1.2e-27 127.9 261 38.7
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.7e-26 124.0 97 64.9
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.7e-26 124.0 97 64.9
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 4.4e-22 109.4 248 39.9
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.7e-21 106.3 223 40.4
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 9.2e-20 101.7 164 40.9
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 1.2e-16 91.3 76 65.8
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 3.1e-15 86.7 159 35.8
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 9.8e-14 81.6 201 31.3
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 3.2e-12 76.6 45 68.9
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 1.6e-08 64.3 102 43.1
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 1.8e-07 60.8 57 50.9
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 4.0e-07 59.7 87 42.5
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 7.5e-06 55.5 88 34.1
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 9.9e-06 55.1 50 52.0


User provided reference genes

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