Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.5e-198 695.3 356 100.0
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.5e-171 606.3 332 94.6
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 3.4e-171 605.1 332 94.0
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 9.2e-169 597.0 332 93.1
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.2e-165 584.3 332 91.9
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 1.5e-163 579.7 332 91.6
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 1.5e-163 579.7 332 91.6
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 5.8e-163 577.8 332 91.6
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 9.9e-163 577.0 333 90.7
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 9.9e-163 577.0 333 90.7
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 9.9e-163 577.0 333 90.7
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 4.9e-162 574.7 333 91.3
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 1.1e-161 573.5 333 91.0
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 1.4e-161 573.2 333 91.0
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 3.5e-160 568.5 337 87.5
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 6.0e-160 567.8 336 87.5
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.7e-159 566.2 361 84.2
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 3.0e-159 565.5 337 87.8
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.0e-159 565.5 336 86.3
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 2.5e-158 562.4 334 87.4
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.1e-157 559.3 336 86.6
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 1.1e-156 557.0 332 88.6
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 5.8e-155 551.2 332 87.0
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 6.4e-154 547.7 335 86.3
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.4e-153 546.6 334 86.5
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 5.4e-153 544.7 335 86.0
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 9.3e-153 543.9 335 86.0
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 9.3e-153 543.9 332 85.8
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 3.0e-151 538.9 334 83.8
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 3.9e-151 538.5 335 85.1
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 5.4e-145 518.1 333 84.1
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.3e-135 486.9 333 74.5
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 5.1e-135 485.0 334 74.0
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.5e-134 483.4 334 74.3
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 3.3e-134 482.3 332 75.3
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 4.3e-134 481.9 332 75.6
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 5.6e-134 481.5 332 75.6
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 5.6e-134 481.5 332 75.3
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 7.4e-134 481.1 335 74.0
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 7.4e-134 481.1 332 75.0
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 3.7e-133 478.8 340 72.9
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 1.1e-132 477.2 294 81.3
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 1.8e-132 476.5 337 73.6
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.8e-132 476.5 352 70.7
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 1.8e-132 476.5 351 72.6
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 1.8e-132 476.5 333 73.9
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 3.1e-132 475.7 352 71.0
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 3.1e-132 475.7 332 74.1
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 6.9e-132 474.6 329 74.2
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 6.9e-132 474.6 332 74.1
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 1.2e-131 473.8 336 72.9
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.2e-131 473.8 332 74.1
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 1.2e-131 473.8 332 72.6
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 2.0e-131 473.0 343 72.0
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 3.4e-131 472.2 335 73.1
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 4.5e-131 471.9 348 71.8
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 4.5e-131 471.9 335 72.2
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 1.0e-130 470.7 332 72.9
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 1.3e-130 470.3 334 73.4
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.7e-130 469.9 329 72.9
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.7e-130 469.9 332 74.1
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 2.9e-130 469.2 350 70.0
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 2.9e-130 469.2 332 73.8
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.9e-130 469.2 349 70.5
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 2.9e-130 469.2 333 73.3
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 3.8e-130 468.8 353 70.8
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 3.8e-130 468.8 332 73.2
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 8.4e-130 467.6 350 71.4
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 8.4e-130 467.6 336 71.4
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.1e-129 467.2 337 72.7
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 1.4e-129 466.8 349 70.2
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 1.4e-129 466.8 295 78.6
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.4e-129 466.8 339 72.0
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 2.5e-129 466.1 297 77.1
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 3.2e-129 465.7 337 73.6
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 4.2e-129 465.3 311 75.2
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 4.2e-129 465.3 332 71.4
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 7.1e-129 464.5 309 76.1
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 9.3e-129 464.2 332 72.9
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 1.2e-128 463.8 332 73.2
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.2e-128 463.8 294 76.5
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.2e-128 463.8 306 76.8
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 1.6e-128 463.4 348 69.0
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 1.6e-128 463.4 332 72.0
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 1.6e-128 463.4 332 72.3
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 2.1e-128 463.0 335 71.3
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 2.1e-128 463.0 332 72.6
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.7e-128 462.6 297 76.8
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 2.7e-128 462.6 333 70.9
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 3.5e-128 462.2 317 73.5
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 6.0e-128 461.5 312 75.0
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 6.0e-128 461.5 348 69.3
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 6.0e-128 461.5 294 78.2
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 6.0e-128 461.5 332 72.6
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 6.0e-128 461.5 297 76.8
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 7.9e-128 461.1 332 71.1
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.0e-127 460.7 348 70.1
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.3e-127 460.3 350 68.9
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.3e-127 460.3 336 72.3
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.8e-127 459.9 336 70.5
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.0e-127 459.1 336 72.0
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 3.9e-127 458.8 336 70.5
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.9e-127 458.8 335 70.4
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.9e-127 458.8 336 70.5
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.1e-127 458.4 332 72.6
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 5.1e-127 458.4 332 71.1
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 6.7e-127 458.0 313 74.4
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 1.5e-126 456.8 332 71.7
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.5e-126 456.1 294 78.9
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.7e-126 454.9 332 72.0
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 5.7e-126 454.9 341 70.1
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 5.7e-126 454.9 348 67.8
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 1.6e-125 453.4 332 71.1
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 2.1e-125 453.0 290 76.6
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 2.1e-125 453.0 290 76.6
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 4.8e-125 451.8 290 77.9
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 6.2e-125 451.4 332 70.2
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 1.4e-124 450.3 332 71.1
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 5.3e-124 448.4 286 77.3
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 1.5e-123 446.8 332 69.6
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.4e-123 445.7 311 72.3
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 5.8e-123 444.9 348 66.4
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 1.7e-122 443.4 332 69.6
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 6.5e-122 441.4 310 71.6
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 3.2e-121 439.1 348 65.5
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 2.1e-120 436.4 332 67.8
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 2.3e-119 433.0 329 66.6
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 3.0e-119 432.6 332 68.1
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 5.1e-119 431.8 227 97.4
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 8.7e-119 431.0 332 68.7
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 9.7e-118 427.6 348 66.7
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 4.8e-117 425.2 259 81.1
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.4e-116 423.7 333 69.4
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 8.5e-114 414.5 248 83.5
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 5.5e-113 411.8 240 83.8
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.3e-111 406.4 275 72.4
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 3.0e-111 406.0 305 67.5
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 5.1e-111 405.2 335 63.0
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 2.5e-110 402.9 319 63.9
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 2.4e-108 396.4 285 72.6
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 3.4e-107 392.5 297 67.0
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 5.9e-107 391.7 315 63.8
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.2e-99 367.5 220 83.6
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.0e-98 364.4 326 61.7
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 5.2e-95 352.1 329 59.9
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.4e-94 349.0 310 59.4
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.7e-93 347.1 211 82.9
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 2.8e-93 346.3 292 61.3
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 2.8e-93 346.3 276 68.1
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 9.4e-89 331.3 307 61.2
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.2e-78 297.7 276 60.1
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.7e-77 293.9 322 51.2
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.4e-71 274.2 176 77.8
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 8.3e-69 265.0 239 57.7
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.6e-67 260.8 136 96.3
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 1.7e-66 257.3 294 49.0
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 3.3e-65 253.1 316 44.3
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 4.9e-61 239.2 348 46.6
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 4.4e-54 216.1 214 55.1
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.3e-50 204.5 216 54.6
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 1.1e-47 194.9 267 41.9
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 1.5e-46 191.0 118 79.7
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 6.2e-40 169.1 183 52.5
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.8e-39 167.5 103 77.7
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.9e-37 160.2 264 38.6
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 4.6e-35 152.9 201 42.8
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 9.6e-33 145.2 133 55.6
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 4.0e-31 139.8 125 65.6
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 3.8e-29 133.3 119 63.9
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 5.1e-26 122.9 72 81.9
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 4.8e-24 116.3 218 42.2
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 9.0e-23 112.1 88 61.4
BcaNung06569 Brassica carinata HOM05D003740 ORTHO05D027079 3.4e-22 110.2 87 73.6
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.4e-20 104.0 75 66.7
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 2.7e-19 100.5 56 83.9
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 1.0e-18 98.6 74 71.6
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 7.1e-12 75.9 60 63.3
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 1.9e-09 67.8 141 36.2
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 8.2e-08 62.4 55 63.6
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 1.8e-07 61.2 35 80.0


User provided reference genes

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