Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 3.7e-120 434.9 219 100.0
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 3.0e-101 372.1 221 86.0
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 6.6e-101 370.9 220 85.5
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 1.5e-100 369.8 220 85.5
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 2.3e-98 362.5 222 84.7
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 3.1e-98 362.1 222 82.9
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 3.1e-98 362.1 222 82.9
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 5.2e-98 361.3 221 85.1
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 4.6e-94 348.2 221 80.5
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 1.0e-93 347.1 221 80.5
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 1.0e-93 347.1 221 80.5
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 3.3e-92 342.0 223 78.9
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 1.2e-91 340.1 220 78.6
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 3.6e-83 312.0 221 71.5
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 1.2e-73 280.4 232 63.4
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 1.0e-69 267.3 207 66.7
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 1.3e-69 266.9 207 64.7
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 5.1e-69 265.0 227 59.9
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 8.7e-69 264.2 234 62.0
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 3.3e-68 262.3 207 64.3
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 2.1e-67 259.6 237 59.9
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 3.7e-67 258.8 204 64.2
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 1.4e-66 256.9 229 62.4
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 1.8e-66 256.5 240 59.2
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 1.2e-65 253.8 211 61.6
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 2.0e-65 253.1 211 62.1
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 3.4e-65 252.3 206 63.6
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 7.6e-65 251.1 208 62.0
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 7.6e-65 251.1 207 62.3
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 1.3e-64 250.4 207 60.9
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 2.9e-64 249.2 248 57.3
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 3.8e-64 248.8 232 56.9
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 8.4e-64 247.7 236 55.9
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 8.4e-64 247.7 211 62.1
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 1.1e-63 247.3 211 61.1
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 1.1e-63 247.3 210 61.9
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 1.1e-63 247.3 233 57.1
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 1.9e-63 246.5 232 57.8
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 3.2e-63 245.7 233 56.7
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 7.1e-63 244.6 205 61.5
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 7.1e-63 244.6 205 61.5
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 7.1e-63 244.6 219 59.4
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 7.1e-63 244.6 209 64.6
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 9.3e-63 244.2 241 53.1
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 3.5e-62 242.3 216 56.5
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 3.5e-62 242.3 230 56.1
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 4.6e-62 241.9 236 55.1
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 6.0e-62 241.5 207 62.3
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 6.0e-62 241.5 237 56.5
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 1.0e-61 240.7 200 61.5
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 1.8e-61 240.0 207 59.9
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 5.1e-61 238.4 208 58.7
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 5.1e-61 238.4 235 55.3
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 6.7e-61 238.0 208 58.7
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 8.7e-61 237.7 242 54.1
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 8.7e-61 237.7 218 55.0
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 1.1e-60 237.3 223 59.2
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 1.1e-60 237.3 236 55.1
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 1.5e-60 236.9 209 58.9
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 1.9e-60 236.5 206 60.2
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 2.5e-60 236.1 200 60.0
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 4.3e-60 235.3 237 56.5
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 7.4e-60 234.6 235 53.6
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 1.6e-59 233.4 243 53.1
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 8.2e-59 231.1 221 56.1
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 1.1e-58 230.7 195 60.5
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 1.8e-58 229.9 243 54.3
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 2.4e-58 229.6 211 60.2
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 6.9e-58 228.0 208 58.2
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 6.9e-58 228.0 236 53.4
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 9.0e-58 227.6 212 57.5
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 1.5e-57 226.9 207 57.0
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 2.0e-57 226.5 207 58.5
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 5.9e-57 224.9 208 56.2
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 7.6e-57 224.6 219 54.8
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 2.9e-56 222.6 212 55.2
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 3.8e-56 222.2 224 53.1
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 9.3e-55 217.6 195 60.5
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 9.3e-55 217.6 200 55.5
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 2.7e-54 216.1 220 54.5
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 3.6e-54 215.7 208 54.8
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 3.6e-54 215.7 240 50.0
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 7.9e-54 214.5 240 51.7
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 3.0e-53 212.6 200 55.0
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 5.1e-53 211.8 149 67.1
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 1.5e-52 210.3 205 53.2
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 1.5e-49 200.3 178 59.0
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 2.0e-49 199.9 131 68.7
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 1.4e-47 193.7 141 63.8
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 9.7e-44 181.0 110 75.5
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 2.8e-43 179.5 118 67.8
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 3.7e-43 179.1 215 48.4
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 6.9e-42 174.9 137 56.9
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 2.2e-40 169.9 108 68.5
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 1.4e-39 167.2 107 69.2
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 4.2e-39 165.6 108 68.5
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 5.5e-39 165.2 298 39.3
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 1.8e-37 160.2 169 52.7
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 2.0e-33 146.7 95 73.7
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 3.2e-31 139.4 137 50.4
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 3.2e-31 139.4 150 51.3
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 1.2e-30 137.5 87 73.6
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 2.7e-25 119.8 76 71.1
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 4.5e-25 119.0 77 70.1
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 9.4e-23 111.3 134 42.5
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 1.2e-22 110.9 186 36.0
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 9.1e-18 94.7 68 67.6
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 9.1e-18 94.7 68 67.6
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 2.9e-16 89.7 126 36.5
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 5.0e-16 89.0 71 56.3
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 2.5e-15 86.7 68 61.8
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 1.0e-13 81.3 58 67.2
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 5.2e-13 79.0 101 48.5
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 6.8e-13 78.6 64 67.2
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 6.8e-13 78.6 64 67.2
Oeu039192.1 Olea europaea HOM05D006876 ORTHO05D008708 7.0e-10 68.6 136 41.9
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 9.2e-10 68.2 43 65.1
HPP92_016900 Vanilla planifolia HOM05D006876 ORTHO05D008708 1.6e-06 57.4 99 40.4


User provided reference genes

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